testbook
ITKElastix
testbook | ITKElastix | |
---|---|---|
2 | 1 | |
399 | 183 | |
0.0% | 2.7% | |
0.0 | 8.3 | |
about 1 year ago | 14 days ago | |
Python | TypeScript | |
BSD 3-clause "New" or "Revised" License | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
testbook
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How to raise the quality of scientific Jupyter notebooks
testbook is maintained by the nteract community, and is good for testing functions written inside notebooks
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Unit testing Python code in Jupyter notebooks
The testbook project is a different take on notebook unit testing. It allows you to refer to your notebooks in pure Python code from outside a notebook. This allows you to use any testing framework you like (for example, pytest, or unittest) in separate Python modules. You may have a situation where allowing users to modify and update notebook code is the best way to keep code updated and to allow for flexibility for end users. But you may prefer that the code still be tested and verified separately. Testbook makes this an option.
ITKElastix
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How to raise the quality of scientific Jupyter notebooks
In ITK extensions such as ITKIOScanco (a module to work with 3D microtomography volumes) or ITKElastix (a toolbox for rigid and nonrigid registration of images), nbmake runs notebooks in GitHub Actions CI tests.
What are some alternatives?
pytest-cov - Coverage plugin for pytest.
ITKIOScanco - ITK Image IO for Scanco MicroCT .ISQ files
best-of-python-dev - ๐ A ranked list of awesome python developer tools and libraries. Updated weekly.
pytest - The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
dirty-equals - Doing dirty (but extremely useful) things with equals.
nbval - A py.test plugin to validate Jupyter notebooks
papermill - ๐ Parameterize, execute, and analyze notebooks
jupyter-book - Create beautiful, publication-quality books and documents from computational content.
pudb - Full-screen console debugger for Python
nbmake - ๐ Pytest plugin for testing notebooks
ITK - Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.