ITKElastix vs nbmake

ITKElastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images (by InsightSoftwareConsortium)

Itk itk-module

Source Code

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nbmake

📝 Pytest plugin for testing notebooks (by treebeardtech)

pytest-plugin Notebook jupyter-book jupyter-notebook papermill nbsphinx Test Jupyter

Source Code

pypi.org

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ITKElastix		nbmake
	Project
1	Mentions	2
184	Stars	174
3.3%	Growth	2.9%
8.3	Activity	7.4
23 days ago	Latest Commit	about 2 months ago
TypeScript	Language	Python
Apache License 2.0	License	Apache License 2.0

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

ITKElastix

Posts with mentions or reviews of ITKElastix. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-01-11.

How to raise the quality of scientific Jupyter notebooks
9 projects | dev.to | 11 Jan 2023

In ITK extensions such as ITKIOScanco (a module to work with 3D microtomography volumes) or ITKElastix (a toolbox for rigid and nonrigid registration of images), nbmake runs notebooks in GitHub Actions CI tests.

nbmake

Posts with mentions or reviews of nbmake. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-01-11.

How to raise the quality of scientific Jupyter notebooks
9 projects | dev.to | 11 Jan 2023

nbmake is a pytest plugin that enables developers to verify that Jupyter notebook files run without error. This lets teams keep notebook-based documents and research up to date in an evolving project.
How to Test Jupyter Notebooks with Pytest and Nbmake
6 projects | dev.to | 8 Jul 2021

This tutorial describes how you can use the pytest plugin nbmake to automate end-to-end testing of notebooks.

What are some alternatives?

When comparing ITKElastix and nbmake you can also consider the following projects:

ITKIOScanco - ITK Image IO for Scanco MicroCT .ISQ files

nbmake-examples - Example repo showing how to test Jupyter Notebooks with nbmake and Semaphore CI

pytest - The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

pytudes - Python programs, usually short, of considerable difficulty, to perfect particular skills.

nbval - A py.test plugin to validate Jupyter notebooks

sparkmagic - Jupyter magics and kernels for working with remote Spark clusters

jupyter-book - Create beautiful, publication-quality books and documents from computational content.

docker-stacks - Ready-to-run Docker images containing Jupyter applications

ITK - Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

starter-workflows - Accelerating new GitHub Actions workflows