sshash
DAR
| sshash | DAR | |
|---|---|---|
| 1 | 5 | |
| 78 | 123 | |
| - | - | |
| 7.1 | 8.9 | |
| 17 days ago | 11 days ago | |
| C++ | C++ | |
| MIT License | GNU General Public License v3.0 only |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
sshash
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Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2
The paper describing a new tool from our lab has just been published in Genome Biology (https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02743-6). Cuttlefish 2 is a tool for efficiently computing the compacted de Bruijn graph (or a spectrum preserving string set) from either raw sequencing reads or from reference genomes. It is quite fast and very memory efficient — for example, we were able to construct the compacted de Bruijn graph on a set of 661K bacterial genomes in 16 hours and 30 minutes using only 48.7GB of RAM. Construction of the compacted de Bruijn graph is an important initial processing step in e.g. genome assembly, and is also important in several other areas such as comparative genomics and as a critical step in building certain types of indices (e.g. [sshash](https://github.com/jermp/sshash)). You can find the cuttlefish 2 software on GitHub [here](https://github.com/COMBINE-lab/cuttlefish), and it can also be installed via Bioconda. We'd be happy to have your feedback!
DAR
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What's a really niche tool you use that you can't live without?
dar is the only tool I know of that supports incremental backups to untrusted remote storage. All the remote sees are giant encrypted blobs.
- Backing up a folder to multiple destination drives
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Uploading encrypted zfs volume to cloud
DAR is a linux tool that does incremental updates after a snapshot: http://dar.linux.free.fr/
- MergerFS or some other way to manually cycle disks to backup? (11TB of data backup to multiple 1TB and 2TB disks)
- Is there a backup software solution that treats HDDs like tapes and writes to them in sequence as they're inserted?
What are some alternatives?
eternal - A C++14 compile-time/constexpr map and hash map with minimal binary footprint
DataBase Magazine - Explore Database Magazine, your go-to resource for the latest trends and insights in data protection, backup, and recovery. Access a comprehensive glossary, best practices, FAQs, and valuable resource
pthash - Fast and compact minimal perfect hash functions in C++.
APC - Arduino Pinball Controller
rspec - (Rust) Rspec - a BDD test harness for stable Rust
neovim - Vim-fork focused on extensibility and usability
Data_Structures_in_Cpp - Contains some useful custom Data-Structures/Containers & Algorithms, developed during my 3rd semester at University.
pdfarranger - Small python-gtk application, which helps the user to merge or split PDF documents and rotate, crop and rearrange their pages using an interactive and intuitive graphical interface.
nnn - n³ The unorthodox terminal file manager