Sshash Alternatives
Similar projects and alternatives to sshash based on common topics and language
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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Data_Structures_in_Cpp
Contains some useful custom Data-Structures/Containers & Algorithms, developed during my 3rd semester at University.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better sshash alternative or higher similarity.
sshash reviews and mentions
Posts with mentions or reviews of sshash.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-09-08.
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Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2
The paper describing a new tool from our lab has just been published in Genome Biology (https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02743-6). Cuttlefish 2 is a tool for efficiently computing the compacted de Bruijn graph (or a spectrum preserving string set) from either raw sequencing reads or from reference genomes. It is quite fast and very memory efficient — for example, we were able to construct the compacted de Bruijn graph on a set of 661K bacterial genomes in 16 hours and 30 minutes using only 48.7GB of RAM. Construction of the compacted de Bruijn graph is an important initial processing step in e.g. genome assembly, and is also important in several other areas such as comparative genomics and as a critical step in building certain types of indices (e.g. [sshash](https://github.com/jermp/sshash)). You can find the cuttlefish 2 software on GitHub [here](https://github.com/COMBINE-lab/cuttlefish), and it can also be installed via Bioconda. We'd be happy to have your feedback!
Stats
Basic sshash repo stats
1
78
7.3
7 days ago
jermp/sshash is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of sshash is C++.
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