serratus VS rich

The Laboratory for RNA-Based Lifeforms | University of Toronto | Full-Time | ONSITE

We're a research computational biology lab at the forefront of RNA virus and virus-like agent discovery. Our goal is to help prevent the next pandemic by building the technical infrastructure to assist global virology research and public-health responses.

Seeking a full-stack developer who is creative, passionate, and willing to learn. No biology experience neccesary, but are a plus. Key assets: Python/R, AWS/HPC, postgres, javascript. See full job posting: http://rrna.ca/id0002

See: Serratus (https://serratus.io)

Serratus (https://github.com/ababaian/serratus) is an OSS bioinformatics project created by a passionate group of volunteers. Short story is we're re-analyzing all of the world's DNA/RNA sequencing data to find new viruses that other people have missed. It works surprisingly well, but there's a ton left to do.

There is an open issue [1] on GitHub to make it more modular and get rid of markdown and syntax highlighting but I have no hope for rich to get more minimal.

[1]: https://github.com/Textualize/rich/issues/2277

I hope he doesn't mind, but the creator of Rich and Textualize is a good guy, and Scottish: https://www.willmcgugan.com/about/

https://www.textualize.io/

https://github.com/Textualize/rich

They keep getting improved error messaging and this is one of my favorite features. But I'd love if we could get some real rich text. Idk if anyone else uses rich, but it has infected all my programs now. Not just to print with colors, but because it makes debugging so much easier. Not just print(f"{var=}") but the handler[0,1]. Color is so important to these types of things and so is formatting. Plus, the progress bars are nice and have almost completely replaced tqdm for me[2]. They're just easier and prettier.

[0] https://rich.readthedocs.io/en/stable/logging.html

[1] Try this example: https://github.com/Textualize/rich/blob/master/examples/exce...

[2] Side note: does anyone know how to get these properly working when using DDP with pytorch? I get flickering when using this and I think it is actually down to a pytorch issue and how they're handling their loggers and flushing the screen. I know pytorch doesn't want to depend on rich, but hey, pip uses rich so why shouldn't everyone?

colors.crumb extends Crumb with basic terminal styling functions and RGB, HEX, ANSI conversion functions. It is in the realm of JavaScript's chalk and Python's rich but slightly more functional 😉.

I am working on a new python project and one of the first things I added was https://github.com/Textualize/rich because of how easy it is to make things look good in the terminal.

I am not rewriting anything but I'd love to have a library like `rich` in Rust: https://github.com/textualize/rich

Add some cool-looking stuff to your output with rich.

You might consider taking inspiration from the rich module. In particular, I like how rich supports inline color theming which seems much more cumbersome in your framework, requiring the use of context managers as well as familiarity with how your framework structures color objects. Other than that though, I'm impressed!