Jupyter Notebook Bioinformatics

Open-source Jupyter Notebook projects categorized as Bioinformatics

Top 9 Jupyter Notebook Bioinformatic Projects

  • graphein

    Protein Graph Library

  • DeepPurpose

    A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  • AllenSDK

    code for reading and processing Allen Institute for Brain Science data

  • serratus

    Ultra-deep search for novel viruses

  • KG_RAG

    Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

    Project mention: A list of system prompts used for biomedical RAG (KG-RAG) using LLM | news.ycombinator.com | 2024-01-10
  • pydna

    Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

  • full_spectrum_bioinformatics

    An open-access bioinformatics text

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  • virnet

    VirNet: A deep attention model for viral reads identification

  • amazon-genomics-cli-demos

    Demos of what can be done with the Amazon Genomics CLI

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2024-01-10.

Jupyter Notebook Bioinformatics related posts

Index

What are some of the best open-source Bioinformatic projects in Jupyter Notebook? This list will help you:

Project Stars
1 graphein 965
2 DeepPurpose 886
3 AllenSDK 323
4 serratus 243
5 KG_RAG 228
6 pydna 149
7 full_spectrum_bioinformatics 62
8 virnet 29
9 amazon-genomics-cli-demos 3
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