sequence_align VS sourmash

Compare sequence_align vs sourmash and see what are their differences.

sequence_align

Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3. (by kensho-technologies)
hirschberg needleman-wunsch pyo3 Python Rust sequence-alignment Bioinformatics Natural Language Processing NLP
Source Code
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sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets. (by sourmash-bio)
Minhash Bioinformatics Rust Python sourmash fracminhash scaled-minhash kmer Sketching taxonomic-classification taxonomic-profiling HacktoberFest
Source Code
sourmash.readthedocs.io
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sequence_align sourmash
1 1
57 435
- 2.1%
4.6 9.4
about 1 year ago 6 days ago
Python Python
Apache License 2.0 GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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sequence_align

Posts with mentions or reviews of sequence_align. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-06.

sourmash

Posts with mentions or reviews of sourmash. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-29.

What are some alternatives?

When comparing sequence_align and sourmash you can also consider the following projects:

rustimport - Import Rust source files directly from Python!

intertext - Detect and visualize text reuse

TheReposterminator - A Reddit bot built to assist moderators in dealing with reposts on their subreddits.

biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

PyO3 - Rust bindings for the Python interpreter

GEMAP_NCLDV - Genome Mapping Analysis Pipeline for giant viruses

fastuuid - FastUUID is a library which provides CPython bindings to Rust's UUID library

rustplus - Rust+ API Wrapper Written in Python for the Game: Rust

orjson - Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy

mosec - A high-performance ML model serving framework, offers dynamic batching and CPU/GPU pipelines to fully exploit your compute machine

pyxirr - Rust-powered collection of financial functions.

sequence_align vs rustimport sourmash vs intertext sequence_align vs TheReposterminator sourmash vs biobakery_workflows sequence_align vs PyO3 sourmash vs GEMAP_NCLDV sequence_align vs fastuuid sourmash vs rustplus sequence_align vs orjson sourmash vs mosec sequence_align vs pyxirr