scDblFinder
Methods for detecting doublets in single-cell sequencing data (by plger)
scarches
Reference mapping for single-cell genomics (by theislab)
scDblFinder | scarches | |
---|---|---|
1 | 1 | |
139 | 315 | |
- | 1.6% | |
6.0 | 6.5 | |
14 days ago | 4 days ago | |
R | Jupyter Notebook | |
GNU General Public License v3.0 only | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
scDblFinder
Posts with mentions or reviews of scDblFinder.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Are there any methods for doublet deconvolution?
The scDblFinder method identifies doublets by combining singlet profiles to generate artificial doublets, then finding the nearest neighbors to those artificial profiles. You could use this approach to deconvolve your doublets, inferring that the two cells in the actual observed doublet are of the same cell types as those used to generate the nearest artificial doublet profile.
scarches
Posts with mentions or reviews of scarches.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Researchers Introduce Single-Cell Architecture Surgery (scArches), A Deep Learning Strategy For Mapping Single-Cell Data to Reference Atlases
GitHub: https://github.com/theislab/scarches
What are some alternatives?
When comparing scDblFinder and scarches you can also consider the following projects:
awesome-single-cell - Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
first-order-model - This repository contains the source code for the paper First Order Motion Model for Image Animation
seurat-docker - Docker images of Seurat
gEAR - The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.