samtools
memexml
| samtools | memexml | |
|---|---|---|
| 3 | - | |
| 1,558 | 3 | |
| 1.5% | - | |
| 8.6 | 0.0 | |
| 4 days ago | over 8 years ago | |
| C | Haskell | |
| GNU General Public License v3.0 or later | BSD 3-clause "New" or "Revised" License |
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samtools
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BWA MEM with merged paired-end reads and unmerged in the same run.
I don’t know about your first question, but for your second, use “bwa mem -p …” for smart pairing of an interleaved FASTQ/A with both paired end reads and singletons. BWA will recognize whether adjacent reads are paired if they have the same prefix (see here)
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Show a Tanuki with Samtools!
In this post, I'm going to add the command tanuki to Samtools to display a ASCII art(AA) tanuki.
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How do I know if I'm gonna get my module?
Quite a number of bioinformatics related tool that were written in C/C++, eg. (https://github.com/samtools/samtools). But there are also a lot of modern packages for Python / R now
memexml
We haven't tracked posts mentioning memexml yet.
Tracking mentions began in Dec 2020.
What are some alternatives?
seqtk - Toolkit for processing sequences in FASTA/Q formats
TaxonomyTools - Tools to process and visualize NCBI taxonomy data
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite
Gene-CluEDO - Gene Cluster Evolution Determined Order
RNAlien - RNAlien - unsupervised RNA family model construction
ADPfusionForest - Dynamic programming on tree and forest structures
libBigWig - A C library for handling bigWig files
ClustalParser - Parse output of Clustal tools
libdna - ♥ Essential Functions for DNA Manipulation
cmv - Visualize HMMs, CMs and their comparisons
htslib - C library for high-throughput sequencing data formats
ViennaRNAParser