Haskell Bioinformatics

Open-source Haskell projects categorized as Bioinformatics

Top 23 Haskell Bioinformatic Projects

  • too-many-cells

    Cluster single cells and analyze cell clade relationships with colorful visualizations.

  • hemokit

    Haskell library for the Emotiv EEG, inspired by the Emokit code

  • SonarQube

    Static code analysis for 29 languages.. Your projects are multi-language. So is SonarQube analysis. Find Bugs, Vulnerabilities, Security Hotspots, and Code Smells so you can release quality code every time. Get started analyzing your projects today for free.

  • PCG

    𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

  • hPDB

    PDB parser in Haskell

  • RNAlien

    RNAlien - unsupervised RNA family model construction

  • bioinformatics-toolkit

    A collection of bioinformatics algorithms

  • Genbank

    Genbank format tools and parser

  • CodiumAI

    TestGPT | Generating meaningful tests for busy devs. Get non-trivial tests (and trivial, too!) suggested right inside your IDE, so you can code smart, create more value, and stay confident when you push.

  • elynx-seq

    Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.

  • zsyntax

    Automated theorem prover for a linear logic-based calculus for molecular biology.

  • hierarchical-spectral-clustering

    Hierarchical spectral clustering of a graph.

  • phybin

    Binning (Newick) Phylogenetic Trees by Topology

  • hyraxAbif

    ABIF parser, writer and generator

  • BlastHTTP

    Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

  • cmv

    Visualize HMMs, CMs and their comparisons

  • SelectSequencesFromMSA

    Tool to select representative sequences from a multiple sequence alignment

  • cobot

    Computational biology toolkit to collaborate with researchers in constructive protein engineering

  • birch-beer

    Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

  • FormalGrammars

    Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

  • seqloc

    Bio.SeqLoc (by ingolia)

  • vcf

    Haskell library to handle VCF (Variant Call Format) files

  • ClustalParser

    Parse output of Clustal tools

  • EntrezHTTP

    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

  • StockholmAlignment

    Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

  • InfluxDB

    Access the most powerful time series database as a service. Ingest, store, & analyze all types of time series data in a fully-managed, purpose-built database. Keep data forever with low-cost storage and superior data compression.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).


What are some of the best open-source Bioinformatic projects in Haskell? This list will help you:

Project Stars
1 too-many-cells 87
2 hemokit 31
3 PCG 26
4 hPDB 20
5 RNAlien 14
6 bioinformatics-toolkit 12
7 Genbank 10
8 elynx-seq 9
9 zsyntax 9
10 hierarchical-spectral-clustering 7
11 phybin 6
12 hyraxAbif 6
13 BlastHTTP 5
14 cmv 5
15 SelectSequencesFromMSA 5
16 cobot 5
17 birch-beer 5
18 FormalGrammars 4
19 seqloc 4
20 vcf 4
21 ClustalParser 4
22 EntrezHTTP 4
23 StockholmAlignment 3
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