Haskell Bioinformatics

Open-source Haskell projects categorized as Bioinformatics | Edit details

Top 23 Haskell Bioinformatic Projects

  • too-many-cells

    Cluster single cells and analyze cell clade relationships with colorful visualizations.

  • hemokit

    Haskell library for the Emotiv EEG, inspired by the Emokit code

  • SonarQube

    Static code analysis for 29 languages.. Your projects are multi-language. So is SonarQube analysis. Find Bugs, Vulnerabilities, Security Hotspots, and Code Smells so you can release quality code every time. Get started analyzing your projects today for free.

  • hPDB

    PDB parser in Haskell

  • PCG

    𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

    Project mention: Do You Know Where Haskell Is Used? | dev.to | 2021-12-13

    The American Museum of Natural History uses Haskell to study the phylogenetic graphs reflecting the evolutionary relationships between different species. The code of this project is also available on GitHub.

  • RNAlien

    RNAlien - unsupervised RNA family model construction

  • bioinformatics-toolkit

    A collection of bioinformatics algorithms

  • Genbank

    Genbank format tools and parser

  • Scout APM

    Less time debugging, more time building. Scout APM allows you to find and fix performance issues with no hassle. Now with error monitoring and external services monitoring, Scout is a developer's best friend when it comes to application development.

  • zsyntax

    Automated theorem prover for a linear logic-based calculus for molecular biology.

  • phybin

    Binning (Newick) Phylogenetic Trees by Topology

  • elynx-seq

    Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.

  • hierarchical-spectral-clustering

    Hierarchical spectral clustering of a graph.

  • SelectSequencesFromMSA

    Tool to select representative sequences from a multiple sequence alignment

  • cmv

    Visualize HMMs, CMs and their comparisons

  • cobot

    Computational biology toolkit to collaborate with researchers in constructive protein engineering

  • birch-beer

    Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

  • FormalGrammars

    Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

  • BlastHTTP

    Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

  • EntrezHTTP

    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

  • ClustalParser

    Parse output of Clustal tools

  • vcf

    Haskell library to handle VCF (Variant Call Format) files

  • seqloc

    Bio.SeqLoc (by ingolia)

  • memexml

    Haskell cabal libary for parsing Meme motif finder xml output

  • BioHMM

    Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2021-12-13.

Index

What are some of the best open-source Bioinformatic projects in Haskell? This list will help you:

Project Stars
1 too-many-cells 75
2 hemokit 31
3 hPDB 20
4 PCG 20
5 RNAlien 13
6 bioinformatics-toolkit 11
7 Genbank 10
8 zsyntax 9
9 phybin 6
10 elynx-seq 6
11 hierarchical-spectral-clustering 6
12 SelectSequencesFromMSA 6
13 cmv 5
14 cobot 5
15 birch-beer 5
16 FormalGrammars 5
17 BlastHTTP 5
18 EntrezHTTP 4
19 ClustalParser 4
20 vcf 4
21 seqloc 4
22 memexml 3
23 BioHMM 3
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