Haskell Bioinformatics

Open-source Haskell projects categorized as Bioinformatics
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Top 23 Haskell Bioinformatic Projects

  • too-many-cells

    Cluster single cells and analyze cell clade relationships with colorful visualizations.

  • hemokit

    Haskell library for the Emotiv EEG, inspired by the Emokit code

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

    WorkOS logo

  • PCG

    𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

  • hPDB

    PDB parser in Haskell

  • RNAlien

    RNAlien - unsupervised RNA family model construction

  • fasta-region-inspector

    A bioinformatics tool for analyzing somatic hypermutation

  • bioinformatics-toolkit

    A collection of bioinformatics algorithms

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • zsyntax

    Automated theorem prover for a linear logic-based calculus for molecular biology.

  • Genbank

    Genbank format tools and parser

  • elynx-seq

    Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.

  • phybin

    Binning (Newick) Phylogenetic Trees by Topology

  • hierarchical-spectral-clustering

    Hierarchical spectral clustering of a graph.

  • cobot

    Computational biology toolkit to collaborate with researchers in constructive protein engineering

  • cmv

    Visualize HMMs, CMs and their comparisons

  • birch-beer

    Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

  • BlastHTTP

    Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

  • FormalGrammars

    Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

  • SelectSequencesFromMSA

    Tool to select representative sequences from a multiple sequence alignment

  • EntrezHTTP

    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

  • ClustalParser

    Parse output of Clustal tools

  • vcf

    Haskell library to handle VCF (Variant Call Format) files

  • seqloc

    Bio.SeqLoc (by ingolia)

  • memexml

    Haskell cabal libary for parsing Meme motif finder xml output

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

What are some of the best open-source Bioinformatic projects in Haskell? This list will help you:

Project Stars
1 too-many-cells 100
2 hemokit 31
3 PCG 28
4 hPDB 20
5 RNAlien 14
6 fasta-region-inspector 14
7 bioinformatics-toolkit 12
8 zsyntax 11
9 Genbank 10
10 elynx-seq 9
11 phybin 8
12 hierarchical-spectral-clustering 7
13 cobot 6
14 cmv 6
15 birch-beer 6
16 BlastHTTP 5
17 FormalGrammars 5
18 SelectSequencesFromMSA 5
19 EntrezHTTP 4
20 ClustalParser 4
21 vcf 4
22 seqloc 4
23 memexml 3

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