rt-utils
raiven
| rt-utils | raiven | |
|---|---|---|
| 2 | 1 | |
| 175 | 11 | |
| 2.9% | - | |
| 3.1 | 9.2 | |
| 10 days ago | over 2 years ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 only |
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rt-utils
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Trying to make masks from CT contours and need help...
I am trying to make masks from CT contours and need some help. I am using the rt_utils extension: https://github.com/qurit/rt-utils. I am having issues with the dicom_series_path - I set my path to be the folder all of the dicom slices are housed in, but I get "permission denied" as the function is looking for a file, not a folder. I then set the path to go directly to the first CT slice, and the function runs but creates an error due to there being no contour on that slice (understandable).
- Varian structure file to training masks
raiven
What are some alternatives?
pydicom - Read, modify and write DICOM files with python code
yellowbrick - Visual analysis and diagnostic tools to facilitate machine learning model selection.
Phantom - Effective DICOM anonymization in Python
oso - Oso is a batteries-included framework for building authorization in your application.
medicaldetectiontoolkit - The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
fpdf2 - Simple PDF generation for Python
mammography_metarepository - Meta-repository of screening mammography classifiers
platipy - Processing Library and Analysis Toolkit for Medical Imaging in Python