rmarkdown VS zotero

I'm surprised to see no one has pointed out [RMarkdown + RStudio](https://rmarkdown.rstudio.com) as one way to immediately interface with Pandoc.

I used to write papers and slides in LaTeX (using vim, because who needs render previews), then eventually switched to Pandoc (also vim). I eventually discovered RMarkdown+RStudio. I was looking for a nice way to format a simple table and discovered that rmarkdown had nice extensions of basic markdown (this was many years ago so maybe that is incorporated into vanilla markdown/pandoc).

The RMarkdown page claims:

> R Markdown supports dozens of static and dynamic output formats including HTML, PDF, MS Word, Beamer, HTML5 slides, Tufte-style handouts, books, dashboards, shiny applications, scientific articles, websites, and more.

...which I think is largely due to using pandoc as the core generator.

RStudio shows you the pandoc command it runs to generate your document, which I've used to figure out the pandoc command I want to run when I've switched to using pandoc directly.

This is a bit of a "lazy" way to interact with pandoc. Maybe the "laziest" aspect: when I get a new computer, I can install the entire stack by installing Rstudio, then opening a new rmarkdown document. Rstudio asks whether I'd like to install all the necessary libraries -- click "yes" and that's it. Maybe that sounds silly but it used to be a lot of work to manage your LaTeX install. These days I greatly favor things that save me time, which seems to get more precious every year.

Then, I worked on a Shiny project where I had to learn R Markdown. I was very excited about it because being paid to learn a new technology is something I have always preferred. I also worked with Highcharts graphs, which I didn’t do for years. It was also the first time I was being paid to design something. I didn’t enjoy that part as much as development, but I cannot say it was a bother either.

files/figure-latex/unnamed-chunk-2-1.pdf) Try to find the following text in midterm-question.Rmd: . See https://github.com/rstudio/rmarkdown/issues/385 for more info.

We used R Markdown for cleaning and analysis, creating updateable web pages we could share with everyone involved. Similarweb’s categories were useful, but too niche for us. So we spent a lot of time recategorizing and redefining the groupings. We used the token count for each website — how many words or phrases — to measure it’s importance in the overall training data.

In [R Markdown](https://rmarkdown.rstudio.com/) or [Quarto](https://quarto.org/), I can include inline code in a math equation, e.g.,

you probably want an rmd file with html output

GitHub issue code folding

R Markdown / Quarto https://quarto.org/ https://rmarkdown.rstudio.com/ ; can dynamically generate a document and compile it to HTML, PDF, others

Hi! At this moment I'm not opening the source code, but I can explain you the tech used. This site is based on another site I created before named https://r-charts.com/ and it was created with blogdown (HUGO + R Markdown). Hence, each tutorials is an R markdown file. For PYTHON CHARTS, in order to run Python within an R markdown file I had to use an R package named reticulate. In addition, the template depends on shuffle.js for filtering and fuse.js for searching

Maybe try Zotero[1]. There are many addons which can do what you need.

[1]https://www.zotero.org/

And next time, you use a real literature management program like zotero (some university libraries offer classes, there is a r/zotero, etc) or jabref to create a proper bibtex file with the references. It is not that difficult, and keeps you sane (esp. if a paper has to be formatted for a different publisher). See e.g. learnlatex.

Zotero | Remote | Full-Time or Part-Time | https://www.zotero.org

Zotero is an open-source project that develops software to help people collect, organize, annotate, cite, and share their research. Our software is recommended by most universities and used by millions of students, scholars, scientists, and researchers worldwide.

We're looking for a JavaScript developer to work on Zotero "translators" — the pieces of code that let people click a button in their browser toolbar on any webpage and save high-quality metadata and files to their Zotero libraries. If you like web scraping, APIs, data formats, and exploring sites in the browser devtools, this would be up your alley. As a core Zotero developer, you'll also have the ability to work across Zotero's vast ecosystem and help shape the future of the project.

This is an open-ended contract role that can scale up and down in hours based on availability and workload.

https://www.zotero.org/jobs

Zotero is your answer, it even auto generates your citations.

https://www.zotero.org/

Apparently there are plugins for Logseq and Obsidian as well.

Zotero - Price: Free Free and open-source reference manager that helps you collect, organize, and cite your research sources.

I use the free and open source Zotero which I think you'd find very calibre-like and manage notes and concept linking with org-roam in emacs.

If you can't hold the urge to know, you can check on the Zotero web library if all of your things are still there

Resources: ZOTERO. Zotero is a free (you can pay to get more storage), open-source citation manager with optional browser plugins. IT WILL FORMAT CITATIONS FOR YOU. (sometimes you have to edit them, but most of the time it can pull metadata and format things correctly on its own). You can sort your references into folders or with tags, read and annotate PDF copies on your computer or in a mobile app, and make notes - which I used to keep track of specific quotations I wanted to use.

You can also use online resources like The Encyclopedia of Archaeological Sciences, that I think is mostly free or the Handbook of Archaeological Sciences which I think is also mostly free. If you can't get a hold of those things you can also email the authors/editors and they might send you a free copy or look them up on Academia.edu and see if they have a free version. Also, if you don't already, use Google Scholar, it's the best resource for finding free articles and topics to read. It's also never too early to start using something like Zotaro, Mendeley, or Endnote to keep track of your readings and help you with citations/references in papers. You can literally download the citation, import it into one of those systems and it automatically formats your referencing.