rmarkdown VS jupytext

Compare rmarkdown vs jupytext and see what are their differences.

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rmarkdown jupytext
38 20
2,827 6,477
0.8% -
7.5 8.8
28 days ago 11 days ago
R Python
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

rmarkdown

Posts with mentions or reviews of rmarkdown. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-01-28.
  • Pandoc
    17 projects | news.ycombinator.com | 28 Jan 2024
    I'm surprised to see no one has pointed out [RMarkdown + RStudio](https://rmarkdown.rstudio.com) as one way to immediately interface with Pandoc.

    I used to write papers and slides in LaTeX (using vim, because who needs render previews), then eventually switched to Pandoc (also vim). I eventually discovered RMarkdown+RStudio. I was looking for a nice way to format a simple table and discovered that rmarkdown had nice extensions of basic markdown (this was many years ago so maybe that is incorporated into vanilla markdown/pandoc).

    The RMarkdown page claims:

    > R Markdown supports dozens of static and dynamic output formats including HTML, PDF, MS Word, Beamer, HTML5 slides, Tufte-style handouts, books, dashboards, shiny applications, scientific articles, websites, and more.

    ...which I think is largely due to using pandoc as the core generator.

    RStudio shows you the pandoc command it runs to generate your document, which I've used to figure out the pandoc command I want to run when I've switched to using pandoc directly.

    This is a bit of a "lazy" way to interact with pandoc. Maybe the "laziest" aspect: when I get a new computer, I can install the entire stack by installing Rstudio, then opening a new rmarkdown document. Rstudio asks whether I'd like to install all the necessary libraries -- click "yes" and that's it. Maybe that sounds silly but it used to be a lot of work to manage your LaTeX install. These days I greatly favor things that save me time, which seems to get more precious every year.

  • 2023 Lookback
    1 project | dev.to | 26 Jan 2024
    Then, I worked on a Shiny project where I had to learn R Markdown. I was very excited about it because being paid to learn a new technology is something I have always preferred. I also worked with Highcharts graphs, which I didn’t do for years. It was also the first time I was being paid to design something. I didn’t enjoy that part as much as development, but I cannot say it was a bother either.
  • Why won't my boxplot knit?
    1 project | /r/u_Mundane-Balance-3358 | 8 Nov 2023
    files/figure-latex/unnamed-chunk-2-1.pdf) Try to find the following text in midterm-question.Rmd: ![](midterm-question_ You may need to add $ $ around a certain inline R expression `r ` in midterm-question.Rmd (see the above hint). See https://github.com/rstudio/rmarkdown/issues/385 for more info.
  • new learner to R .. need help
    1 project | /r/RStudio | 16 Jun 2023
  • We’re Washington Post reporters who analyzed Google’s C4 data set to see which websites AI uses to make itself sound smarter. Ask us Anything!
    4 projects | /r/IAmA | 16 May 2023
    We used R Markdown for cleaning and analysis, creating updateable web pages we could share with everyone involved. Similarweb’s categories were useful, but too niche for us. So we spent a lot of time recategorizing and redefining the groupings. We used the token count for each website — how many words or phrases — to measure it’s importance in the overall training data.
  • Possible to include inline code in a math equation in Org mode?
    1 project | /r/orgmode | 6 May 2023
    In [R Markdown](https://rmarkdown.rstudio.com/) or [Quarto](https://quarto.org/), I can include inline code in a math equation, e.g.,
  • I have to somehow convert this chart into an html file into a file that opens like a website any ideas?
    1 project | /r/RStudio | 5 Mar 2023
    you probably want an rmd file with html output
  • Seeking some markdown help - please redirect me elsewhere if this doesn't belong here
    1 project | /r/rstats | 21 Dec 2022
    GitHub issue code folding
  • Generating PDF 📄 with Python 🐍
    3 projects | /r/learnpython | 15 Dec 2022
    R Markdown / Quarto https://quarto.org/ https://rmarkdown.rstudio.com/ ; can dynamically generate a document and compile it to HTML, PDF, others
  • PYTHON CHARTS: the Python data visualization site with more than 500 different charts with reproducible code and color tools
    3 projects | /r/Python | 18 Oct 2022
    Hi! At this moment I'm not opening the source code, but I can explain you the tech used. This site is based on another site I created before named https://r-charts.com/ and it was created with blogdown (HUGO + R Markdown). Hence, each tutorials is an R markdown file. For PYTHON CHARTS, in order to run Python within an R markdown file I had to use an R package named reticulate. In addition, the template depends on shuffle.js for filtering and fuse.js for searching

jupytext

Posts with mentions or reviews of jupytext. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-07-19.
  • The Jupyter+Git problem is now solved
    7 projects | news.ycombinator.com | 19 Jul 2023
    9 projects | news.ycombinator.com | 25 Aug 2022
  • Do you git commit jupyter notebooks?
    2 projects | /r/datascience | 23 Jun 2023
    Jupytext (https://github.com/mwouts/jupytext) has been designed exactly for this
  • The hatred towards jupyter notebooks
    2 projects | /r/datascience | 12 Mar 2023
    jupytext is your friend.
  • Edit notebooks in Google cloud
    3 projects | /r/neovim | 19 Feb 2023
    So if you run your own jupyter server, -jupy+text can be a great workflow : it takes your notebook synchronized with other formats (python file, makdown, ...), so you can edit your py/md file with neovim, and refresh the browser to execute the notebook.
  • Rant: Jupyter notebooks are trash.
    6 projects | /r/datascience | 24 Jan 2023
    Automatically convert ipynb files to py when saving them on JupyterLab
  • Two questions regarding working with jupyter notebooks (git, vim)
    1 project | /r/learnprogramming | 14 Dec 2022
    I don't use Jupyter so I don't know for sure, but on a quick glance you might want to look at https://github.com/mwouts/jupytext to see if that could help at all.
  • JupyterLite is a JupyterLab distribution that runs in the browser
    10 projects | news.ycombinator.com | 28 Nov 2022
    The format is only partially invented, it follows Jupytext [0], but adds support for cell metadata. There is no obvious way to get that in fenced codeblocks, especially with the ability to spread it over multiple lines so it plays well with version control.

    One more consideration is that it's not "Markdown with code blocks interspersed", one might as well use plaintext or AsciiDoc.

    Of course there are tradeoffs.. I wish I had more time to work on it.

    [0]: https://github.com/gzuidhof/starboard-notebook/blob/master/d...

    [1]: https://github.com/mwouts/jupytext

  • Many write research papers in R Markdown - What is the alternative setup in Python?
    4 projects | /r/Python | 14 Jul 2022
    Using jupytext (allows you to open .md files as notebooks) + jupyter gives you pretty much the same experience. The main issue is that the cell's output will be discarded. To fix it, you can use ploomber to generate an output HTML, so the workflow goes like this:
  • Jupyter Notebooks.
    2 projects | /r/datascience | 29 Jun 2022
    First, the format. The ipynb format does not play nicely with git since it stores the cell's source code and output in the same file. But Jupyter has built-in mechanisms to allow other formats to look like notebooks. For example, here's a library that allows you to store notebooks on a postgres database (I know this isn't practical, but it's a great example). To give more practical advice, jupytext allows you to open .py files as notebooks. So you can develop interactively but in the backend, you're storing .py files.

What are some alternatives?

When comparing rmarkdown and jupytext you can also consider the following projects:

Pluto.jl - 🎈 Simple reactive notebooks for Julia

jupyter - An interface to communicate with Jupyter kernels.

here_here - I love the here package. Here's why.

sagemaker-run-notebook - Tools to run Jupyter notebooks as jobs in Amazon SageMaker - ad hoc, on a schedule, or in response to events

tinytex - A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live

nbdev - Create delightful software with Jupyter Notebooks

TikZ - Complete collection of my PGF/TikZ figures.

papermill - 📚 Parameterize, execute, and analyze notebooks

blogdown - Create Blogs and Websites with R Markdown

nbdime - Tools for diffing and merging of Jupyter notebooks.

codebraid - Live code in Pandoc Markdown

ploomber - The fastest ⚡️ way to build data pipelines. Develop iteratively, deploy anywhere. ☁️

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