reloadium
scanpy
Our great sponsors
reloadium | scanpy | |
---|---|---|
138 | 5 | |
2,691 | 1,757 | |
1.4% | 2.9% | |
5.0 | 9.3 | |
17 days ago | about 14 hours ago | |
Python | Python | |
Apache License 2.0 | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
reloadium
scanpy
- Renaming Genes for Scanpy Plot
- Useful Python Decorators for Data Scientists
-
[Scanpy] Installation issues related to pytables
Upon searching stack, I still do not understand the exact issue, as the file "hdf5extension.cp38-win_amd64" is present within C:\Users\username\anaconda3\lib\site-packages\tables\. Would anyone be able to explain the problem and any potential circumventions?
-
standardize/normalize seq data
I would suggest you explore with SCANPY and verify if your batch labels generate a strong separation in your samples (PCA, tSNE, UMAP). If you then need to correct for batches, according to how simple/complex they are, you can choose a tool from this benchmark.
-
Flipping one histogram below the axis.
I am plotting 2 1-D histograms on top of one another using a hold on command. Is there a way to have one histogram be upside down, and then to flip the entire plot 90˚? I am looking to create a violin plot https://github.com/theislab/scanpy/issues/1448 on my own, having one histogram on the left, and one on the right.
What are some alternatives?
jurigged - Hot reloading for Python
scikit-learn - scikit-learn: machine learning in Python
manim - A community-maintained Python framework for creating mathematical animations.
dash - Data Apps & Dashboards for Python. No JavaScript Required.
PyNeuraLogic - PyNeuraLogic lets you use Python to create Differentiable Logic Programs
data-science-ipython-notebooks - Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
hatch - Modern, extensible Python project management
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
line_profiler - Line-by-line profiling for Python
dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js
RPA-Python - Python package for doing RPA
pagoda2 - R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets