refdb_generator
Automated creation of a few different HMM and diamond reference (by PedroMTQ)
UniFuncNet
A multi-reference network annotation tool to support omics analysis (by PedroMTQ)
| refdb_generator | UniFuncNet | |
|---|---|---|
| 1 | 2 | |
| 4 | 10 | |
| - | - | |
| 0.0 | 0.0 | |
| about 2 years ago | almost 2 years ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
refdb_generator
Posts with mentions or reviews of refdb_generator.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-20.
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Functional annotation of prokaryotic genomes
atm BIGG is not linked to any of the databases, but I do have another repo with BIGG genes (diamond DB) and BIGG reactions (HMMs). You could then just add these to the mantis config file (see here how) and use them alongside the other references.
UniFuncNet
Posts with mentions or reviews of UniFuncNet.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-20.
- Bioinformatics packages that integrate schemas and ETL for major biology related databases?
-
Functional annotation of prokaryotic genomes
It is also possible to link BIGG to kofam (cross-linking was done with this repo), and while I do have this data I did not include it in mantis (feel free to contact me and I can send you the data).