raiven
rt-utils
raiven | rt-utils | |
---|---|---|
1 | 2 | |
11 | 175 | |
- | 2.9% | |
9.2 | 3.1 | |
over 2 years ago | 10 days ago | |
Python | Python | |
GNU General Public License v3.0 only | MIT License |
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raiven
rt-utils
-
Trying to make masks from CT contours and need help...
I am trying to make masks from CT contours and need some help. I am using the rt_utils extension: https://github.com/qurit/rt-utils. I am having issues with the dicom_series_path - I set my path to be the folder all of the dicom slices are housed in, but I get "permission denied" as the function is looking for a file, not a folder. I then set the path to go directly to the first CT slice, and the function runs but creates an error due to there being no contour on that slice (understandable).
- Varian structure file to training masks
What are some alternatives?
yellowbrick - Visual analysis and diagnostic tools to facilitate machine learning model selection.
pydicom - Read, modify and write DICOM files with python code
oso - Oso is a batteries-included framework for building authorization in your application.
Phantom - Effective DICOM anonymization in Python
fpdf2 - Simple PDF generation for Python
medicaldetectiontoolkit - The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
mammography_metarepository - Meta-repository of screening mammography classifiers
platipy - Processing Library and Analysis Toolkit for Medical Imaging in Python