pydna
BioSequences.jl
| pydna | BioSequences.jl | |
|---|---|---|
| 1 | 3 | |
| 153 | 146 | |
| - | 0.7% | |
| 9.4 | 6.1 | |
| 4 days ago | about 1 month ago | |
| Jupyter Notebook | Julia | |
| GNU General Public License v3.0 or later | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pydna
-
Most optimal programming language for the field of genetics?
pydna: https://github.com/BjornFJohansson/pydna
BioSequences.jl
- findall in BioSequences.jl and Base
-
Learning which programming language will make me the most accessible in bioinformatics community? (if there's any)
https://github.com/BioJulia/BioSequences.jl/blob/master/src/longsequences/longsequence.jl#L10
-
N-Grams in julia
Yes, you should use the BioSequences.jl package for this - assuming you don't need k-mers longer than 32 bases, or need kmers of anything other than DNA or RNA.
What are some alternatives?
fastpages - An easy to use blogging platform, with enhanced support for Jupyter Notebooks.
gazelle - BioTorrents.de’s version of Gazelle
py - Repository to store sample python programs for python learning
jupyter-memgraph-tutorials - Learn to use Memgraph and GQLAlchemy quickly with the help of Jupyter Notebooks
full_spectrum_bioinformatics - An open-access bioinformatics text
transient_rotordynamic - transient dynamics of elastic rotors in journal bearings with Julia and Python
article_apply_test_in_jupyter_notebook - Article apply test in jupyter notebook
HyRiver-examples - Example Notebooks for HyRiver software stack
QUEEN - QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
bamboo - Cooling system modelling for liquid rocket engines.
julia-vim - Vim support for Julia.