phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page: (by joey711)
picrust2
Code, unit tests, and tutorials for running PICRUSt2 (by picrust)
phyloseq | picrust2 | |
---|---|---|
3 | 1 | |
559 | 291 | |
- | 0.0% | |
0.0 | 4.1 | |
22 days ago | about 1 year ago | |
R | Python | |
- | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
phyloseq
Posts with mentions or reviews of phyloseq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-09.
- Analyzing microbial 16s data
-
Phyloseq find taxa percentages
While I am not super familiar with Phyloseq myself, I did find on their GitHub a possible solution. It can be found her: https://github.com/joey711/Phyloseq/issues/1521
- Any online metagenomics courses/tutorials that you could recommend?
picrust2
Posts with mentions or reviews of picrust2.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-09.
What are some alternatives?
When comparing phyloseq and picrust2 you can also consider the following projects:
biobakery - bioBakery tools for meta'omic profiling