phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page: (by joey711)
biobakery
bioBakery tools for meta'omic profiling (by biobakery)
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
phyloseq
Posts with mentions or reviews of phyloseq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-09.
- Analyzing microbial 16s data
-
Phyloseq find taxa percentages
While I am not super familiar with Phyloseq myself, I did find on their GitHub a possible solution. It can be found her: https://github.com/joey711/Phyloseq/issues/1521
- Any online metagenomics courses/tutorials that you could recommend?
biobakery
Posts with mentions or reviews of biobakery.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-09.
What are some alternatives?
When comparing phyloseq and biobakery you can also consider the following projects:
picrust2 - Code, unit tests, and tutorials for running PICRUSt2
bitbar-plugins - Plugin repository for xbar (the BitBar reboot)
swiftenv - Swift Version Manager
distrobox - Use any linux distribution inside your terminal. Enable both backward and forward compatibility with software and freedom to use whatever distribution you’re more comfortable with. Mirror available at: https://gitlab.com/89luca89/distrobox
powerlevel9k - Powerlevel9k was a tool for building a beautiful and highly functional CLI, customized for you. P9k had a substantial impact on CLI UX, and its legacy is now continued by P10k.