pestalotiopsis
Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi. (by EverymanBio)
TMAP
Torrent Mapping Alignment Program (by iontorrent)
| pestalotiopsis | TMAP | |
|---|---|---|
| 1 | 1 | |
| 7 | 49 | |
| - | - | |
| 0.0 | 10.0 | |
| about 2 years ago | about 10 years ago | |
| Python | C | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pestalotiopsis
Posts with mentions or reviews of pestalotiopsis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-12-26.
-
Sequencing your DNA with a USB dongle and open source code
That's not true. I just did a high-quality sequence and assembly of a new species of fungus from my home lab using nanopore. You can see all my code used for assembly and analysis that will be referenced in a paper I plan to publish in Jan here: https://github.com/EverymanBio/pestalotiopsis
TMAP
Posts with mentions or reviews of TMAP.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-12-26.
-
Sequencing your DNA with a USB dongle and open source code
bwa specifically performs a burrows wheeler transform of a 3GB string. other mapping algorithms usually rely on some sort of indexing of the genome. the program then loads this into memory and queries that index for each “read” (a dna fragment from the dna sequencer).
when i worked on https://github.com/iontorrent/tmap we thought it would be a good idea to do something like a “local alignment” (using https://en.wikipedia.org/wiki/Smith–Waterman_algorithm) after doing a lookup into a burrows wheeler transform on a substring of the “read.”
What are some alternatives?
When comparing pestalotiopsis and TMAP you can also consider the following projects:
malware-phylogeny - malware phylogeny for WSO web shell, Shellbot IRC bot and algorithm