TMAP Alternatives
Similar projects and alternatives to TMAP
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pestalotiopsis
Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better TMAP alternative or higher similarity.
TMAP reviews and mentions
Posts with mentions or reviews of TMAP.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-12-26.
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Sequencing your DNA with a USB dongle and open source code
bwa specifically performs a burrows wheeler transform of a 3GB string. other mapping algorithms usually rely on some sort of indexing of the genome. the program then loads this into memory and queries that index for each “read” (a dna fragment from the dna sequencer).
when i worked on https://github.com/iontorrent/tmap we thought it would be a good idea to do something like a “local alignment” (using https://en.wikipedia.org/wiki/Smith–Waterman_algorithm) after doing a lookup into a burrows wheeler transform on a substring of the “read.”
Stats
Basic TMAP repo stats
1
49
10.0
about 10 years ago
iontorrent/TMAP is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.
The primary programming language of TMAP is C.
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