pestalotiopsis
Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi. (by EverymanBio)
Sniffles
Structural variation caller using third generation sequencing (by fritzsedlazeck)
| pestalotiopsis | Sniffles | |
|---|---|---|
| 1 | 1 | |
| 7 | 513 | |
| - | - | |
| 0.0 | 7.7 | |
| about 2 years ago | 8 days ago | |
| Python | Python | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pestalotiopsis
Posts with mentions or reviews of pestalotiopsis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-12-26.
-
Sequencing your DNA with a USB dongle and open source code
That's not true. I just did a high-quality sequence and assembly of a new species of fungus from my home lab using nanopore. You can see all my code used for assembly and analysis that will be referenced in a paper I plan to publish in Jan here: https://github.com/EverymanBio/pestalotiopsis
Sniffles
Posts with mentions or reviews of Sniffles.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Is anyone here familiar with the alignment tool Mauve?
Maybe this is interesting for you: https://github.com/fritzsedlazeck/Sniffles
What are some alternatives?
When comparing pestalotiopsis and Sniffles you can also consider the following projects:
malware-phylogeny - malware phylogeny for WSO web shell, Shellbot IRC bot and algorithm
truvari - Structural variant toolkit for VCFs
MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
manta - Structural variant and indel caller for mapped sequencing data
pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data