paperai
magnitude
paperai | magnitude | |
---|---|---|
19 | 5 | |
1,198 | 1,611 | |
1.3% | 0.1% | |
5.9 | 0.0 | |
5 months ago | 9 months ago | |
Python | Python | |
Apache License 2.0 | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
paperai
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Oracle of Zotero: LLM QA of Your Research Library
Nice project!
I've spent quite a lot of time in the medical/scientific literature space. With regards to LLMs, specifically RAG, how the data is chunked is quite important. With that, I have a couple projects that might be beneficial additions.
paperetl (https://github.com/neuml/paperetl) - supports parsing arXiv, PubMed and integrates with GROBID to handle parsing metadata and text from arbitrary papers.
paperai (https://github.com/neuml/paperai) - builds embeddings databases of medical/scientific papers. Supports LLM prompting, semantic workflows and vector search. Built with txtai (https://github.com/neuml/txtai).
While arbitrary chunking/splitting can work, I've found that integrating parsing that has knowledge of medical/scientific paper structure increases the overall accuracy and experience of downstream applications.
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Build Personal ChatGPT Using Your Data
https://github.com/neuml/paperai
Disclaimer: I am the author of both
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[P] Parse research papers into structured data
paperai | paperetl
- Show HN: Semantic search and workflows for medical/scientific papers
- Semantic search and workflows for medical/scientific papers
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# Run txtai in native code
action: translate input: txtai executes machine-learning workflows to transform data and build AI-powered semantic search applications. output: txtai exécute des workflows d'apprentissage automatique pour transformer les données et construire des applications de recherche sémantique alimentées par l'IA. action: translate input: Traditional search systems use keywords to find data output: Les systèmes de recherche traditionnels utilisent des mots-clés pour trouver des données action: summary input: https://github.com/neuml/txtai output: txtai executes machine-learning workflows to transform data and build AI-powered semantic search applications. Semantic search applications have an understanding of natural language and identify results that have the same meaning, not necessarily the same keywords. API bindings for JavaScript, Java, Rust and Go. Cloud-native architecture scales out with container orchestration systems (e. g. Kubernetes) action: summary input: https://github.com/neuml/paperai output: paperai is an AI-powered literature discovery and review engine for medical/scientific papers. Paperai was used to analyze the COVID-19 Open Research Dataset (CORD-19) paperai and NeuML have been recognized in the following articles: Cord-19 Kaggle Challenge Awards Machine-Learning Experts Delve Into 47,000 Papers on Coronavirus Family. real 0m22.478s user 0m13.776s sys 0m3.218s
magnitude
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Text Classification Library for a Quick Baseline
(3) FastText now supports multiple languages [2].
[1] https://github.com/plasticityai/magnitude#pre-converted-magn...
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Pgvector – vector similarity search for Postgres
Check out Magnitude, we built it to solve that problem: https://github.com/plasticityai/magnitude
It's still loaded from a file, but heavily uses memory-mapping and caching to be speedy and not overload your RAM immediately. And in production scenarios, multiple worker processes can share that memory due to the memory mapping.
Disclaimer: I'm the author.
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Build an Embeddings index from a data source
General language models from pymagnitude
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Tutorial series on txtai
Backed by the pymagnitude library. Pre-trained word vectors can be installed from the referenced link.
What are some alternatives?
txtai - đź’ˇ All-in-one open-source embeddings database for semantic search, LLM orchestration and language model workflows
flashtext - Extract Keywords from sentence or Replace keywords in sentences.
tika-python - Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.
faiss - A library for efficient similarity search and clustering of dense vectors.
SciencePlots - Matplotlib styles for scientific plotting
pgvector - Open-source vector similarity search for Postgres
sentence-transformers - Multilingual Sentence & Image Embeddings with BERT
finalfusion-rust - finalfusion embeddings in Rust
Milvus - A cloud-native vector database, storage for next generation AI applications
scibert - A BERT model for scientific text.