pango-designation
Repository for suggesting new lineages that should be added to the current scheme (by cov-lineages)
CovidColoradoCharts
Charts from Colorado's COVID data (by jasondorjeshort)
Our great sponsors
pango-designation | CovidColoradoCharts | |
---|---|---|
209 | 45 | |
1,027 | 2 | |
0.1% | - | |
0.0 | 0.0 | |
8 days ago | over 1 year ago | |
Jupyter Notebook | ||
GNU General Public License v3.0 or later | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pango-designation
Posts with mentions or reviews of pango-designation.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-15.
- Sequencing and Variants Update - [Dec 01, 2023]
- Sequencing and Variants Update - [Nov. 24, 2023]
- Sequencing and Variants Update - [Oct. 06]
- Sequencing and Variants Update - [Sep 29, 2023]
- Sequencing and Variants Update - [Sep. 15, 2023]
- Sequencing and Variants Update - [Sep. 08, 2023]
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Daily Notes - August 14, 2023
And don't miss this news as well as the link that goes to the discussion.
- Sequences and Variants Update - [July 28th]
CovidColoradoCharts
Posts with mentions or reviews of CovidColoradoCharts.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-07-08.
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September 2 2022 4 PM CDPHE Update
By onset and reported day, the case drop has stopped. It doesn't seem certain if we are in a plateau for the last few weeks, or if cases are rising, or if it's just a back-to-school plateau followed by further drops. It is not driven by new variants though; BA.4.6 is still <10% of nationwide infections and all the next-gen variants combined are <1%.
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August 26 2022 4 PM CDPHE Update
By reported and onset date, cases may have flattened. This wasn't visible in the reported-day numbers until today, but it's been showing in the onset-day numbers for a week or so. It could be variance, but the flattening of positivity at the same time makes it more likely to be real. If true though this isn't caused by a new variant; everything is still BA.5 for now.
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August 19 2022 4 PM CDPHE Update
By reported and onset date, cases are still falling.
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August 5 2022 4 PM CDPHE Update
By reported and onset date cases keep slowly dropping. Smoothed growth rate is down to -10-15% per week. Super approximate and I should probably make an actual model here, but if there were 1500 cases/day on July 20th and -2% per day, that puts us down to 1000-1100 new cases with onset day of today, which would be the lowest since the start of May.
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July 29 2022 4PM CDPHE Update
Cases by reported and onset date.
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July 15 2022 4PM CDPHE Update
By onset and reported date, cases seem to be curving up a bit, but with no rapid rise from BA.5 so far. The normal surge pattern is that the upward curving will continue until an inflection point, then it'll curve back down to and beyond the surge peak. But whether this happens soon, or if upward acceleration goes on for a while, or even if we're already past the inflection point, is likely impossible to know.
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July 8 2022 4PM CDPHE Update
By reported or onset date, there's still no definitive case rise from BA.5.
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July 1 2022 4PM CDPHE Update
By onset and reported date, cases are doing some weird up and down thing. It's probably a plateau and the variance just random, as BA.2.12.1 drops and BA.5 continues to take over. This likely won't last long; within a few weeks BA.5 will be the large majority of cases and for it to stay flat at R(t)~1 isn't unlikely.
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June 24 2022 4PM CDPHE Update
By reported and onset date, cases have firmly dropped over the last week. This represents BA.2.12.1 peaking and subsiding.
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June 17 2022 4PM CDPHE Update
There's several indications that BA.2.12.1 may have now peaked. This is based first on state case numbers by reported and onset date, which have flattened completely by onset date and have been declining slightly by reported date. And secondly, on Bedford labs' per-variant case estimates, which although they do have high error show BA.2.12.1 declining in the most recent sample collection days available.
What are some alternatives?
When comparing pango-designation and CovidColoradoCharts you can also consider the following projects:
pangolin - Software package for assigning SARS-CoV-2 genome sequences to global lineages.
rt-from-frequency-dynamics
pangoLEARN - Store of the trained model for pangolin to access.
nitter - Alternative Twitter front-end
covid-19-excess-deaths-tracker - Source code and data for The Economist's covid-19 excess deaths tracker
privacy-redirect - A simple web extension that redirects Twitter, YouTube, Instagram & Google Maps requests to privacy friendly alternatives.
SARS-CoV-2_variant-reports - Informal summaries of notable SARS-CoV-2 lineages
pango-designation vs pangolin
CovidColoradoCharts vs rt-from-frequency-dynamics
pango-designation vs pangoLEARN
pango-designation vs nitter
pango-designation vs covid-19-excess-deaths-tracker
pango-designation vs privacy-redirect
pango-designation vs rt-from-frequency-dynamics
pango-designation vs SARS-CoV-2_variant-reports