org-roam-bibtex
zetteldesk.el
org-roam-bibtex | zetteldesk.el | |
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10 | 10 | |
561 | 111 | |
0.9% | - | |
3.1 | 3.8 | |
2 months ago | 11 months ago | |
Emacs Lisp | Emacs Lisp | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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org-roam-bibtex
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Emacs and knowledge management for scientists
In addition to org-roam, I would recommend checking out https://github.com/org-roam/org-roam-bibtex for attaching notes to specific papers that are indexed by an application like Zotero. Some good tutorials for it are here: https://rgoswami.me/posts/org-note-workflow/ and https://blog.jethro.dev/posts/how_to_take_smart_notes_org/ and https://emacsconf.org/2020/talks/17/ . Since current org-roam (post-v2) uses the normal org-mode "id" form, you can make any "headline" into an roam-registered node. You could then split your long derivations into different headlines, where the body of the headline or descriptive text could refer to prior nodes, but any latex is inserted using org latex blocks https://orgmode.org/worg/org-contrib/babel/languages/ob-doc-LaTeX.html . You've maybe already considered this (and I wouldn't be surprised if local references were easier to do in straight latex), but org-roam-bibtex is really nice for interfacing with your citation system for other papers.
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Starting my PhD and keeping my lab notebook in org-mode!
I think you should also look org-roam and org-roam-bibtex (I can't configure org-roam-bibtex properly because I'm on Windows).
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Write research paper notes/summaries in emacs
Taking this one step further, if you use the excellent org-roam package (which if you don't you should definitely check it out, its great for note-taking), there is a package called org-roam-bibtex which communicates very well with the aforementioned packages. With it, you can create bibliographic notes as part of your org-roam repository from their bibtex entry and initialize the file to also include a link to the pdf from org-noter. Once you learn it, its a very powerful and streamlined workflow for working with articles which makes your life very easy. Its quite a bit of reading to do on your end on how to make all these work together, but trust me its worth it.
- Org-roam-bibtex: Org Roam integration with bibliography management software
- Help with getting Work Flow Right
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Errors when creating new node
Have you followed the discussion here: https://github.com/org-roam/org-roam-bibtex/issues/159
- Reminder: org-roam and org-roam-bibtex will be upgraded to V2 the next Friday or Saturday (depending of your time zone). This upgrade is incompatible with the current configurations. Don't forget to upgrade yours.
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Question about the org-roam redesign
If you want to use it primarily for literature notes, maybe you should have a look at the current state of https://github.com/org-roam/org-roam-bibtex/tree/org-roam-v2 before deciding.
- Easy Annotated Bibliographies with org-roam-bibtex?
zetteldesk.el
- Zetteldesk.el has a new update after a few months! Check it out and please tell me your opinion on it.
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Emacs and knowledge management for scientists
For publishing stuff, Emacs has a very rich ecosystem. Org-export libraries are very powerful and allow you to export to virtually any format you desire. There is also org-publish for publishing your work, which works very well. However, when you have a bunch of org-roam nodes, it is not so easy to export all of them. I have personally created a tool for gathering a lot of your org-roam nodes in one file, your so-called "desktop" which can be used for revision of topics, writing manuscripts for articles or just straight up publishing your notes. You can find it here.
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Storing all nodes in a single file by default (?) - Linear visualisation
Hey, this is a bit of a self plug, but since I had the exact same problem with you, I am pretty sure I have exactly what you are looking for. Last year, I wrote zetteldesk.el and one of its core functionalities is exactly collecting a set of org-roam nodes and adding them to a buffer in a specific order so you can revise them as you like.
- zetteldesk.el is now on MELPA
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How do people search their org roam notes?
If your problems are just filtering and sorting your notes, then you should have no trouble. You can even insert them in a temporary buffer and view them all simultaneously. Albeit completely unrelated to daily notes, I recently wrote a package to solve this exact problem you describe, but instead of daily notes, I wanted to filter an arbitrary selection of notes. You can check it out here, the source might give you some inspiration for how to do what you want. Ripgrep is an excellent tool for searching your notes, but what you are asking for isn't really its use case I feel, you want more of a filter, not a search tool.
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Org-roam journey
Not sure what you mean on the first one. The second one's easiest solution is probably org-transclusion as what you're asking is to translude notes. But other packages with a similar concept of collecting your notes and adding them in a separate buffer are things such as delve or (shameless self plug) zetteldesk. I got no clue how to do the third one. I agree with you on that todos should work in more places, but I also don't know how to fix it. For the one with the calendar, I am pretty sure calfw has an extension that does that. I think calfw-org?
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I revamped the README of zetteldesk.el to make it easier to understand. What do you think of it?
Last week, I released my new emacs package zetteldesk.el and made a post here for showcasing it. The idea was rather well accepted but I got a lot of feedback, that the README was too dense in information and it was hard for a new user to try it. I have tried fixing this, by integrating gifs for demonstrations instead of the raw info (which I moved to the wiki for anyone wanting it), adding a set of default bindings in the form of a hydra and a small sample config to get you started.
- Show HN: Zetteldesk – Zettelkasten for Org-Roam
- zetteldesk.el: Built on top of org-roam. Easily revise various subjects or outline them
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New Package: Zetteldesk.el - A tool for revision and outlining built on top of Org-Roam
Link: https://github.com/Vidianos-Giannitsis/zetteldesk.el
What are some alternatives?
doom-emacs-config - Doom Emacs configuration finely tuned for "distraction-free' academic writing
emacs-calfw - A calendar framework for Emacs
helm-bibtex - Search and manage bibliographies in Emacs
delve - Delve into your org-roam zettelkasten
md-roam - Use Org-roam with markdown files by adding Md-roam as a plug-in. Mix org and markdown files in a single Org-roam database.
Zero-to-Emacs-and-Org-roam - Step by step guide from zero to installing and setting up Emacs and Org-roam on Windows 10
notdeft - NotDeft note manager for Emacs
citar - Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.
Joplin - Joplin - the secure note taking and to-do app with synchronisation capabilities for Windows, macOS, Linux, Android and iOS.
citeproc-el - A CSL 1.0.2 Citation Processor for Emacs.
zk - Emacs packages for working with Zettelkasten-style linked notes