org-roam-bibtex
citeproc-el
org-roam-bibtex | citeproc-el | |
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10 | 5 | |
561 | 81 | |
0.9% | - | |
3.1 | 6.9 | |
2 months ago | about 2 months ago | |
Emacs Lisp | Emacs Lisp | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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org-roam-bibtex
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Emacs and knowledge management for scientists
In addition to org-roam, I would recommend checking out https://github.com/org-roam/org-roam-bibtex for attaching notes to specific papers that are indexed by an application like Zotero. Some good tutorials for it are here: https://rgoswami.me/posts/org-note-workflow/ and https://blog.jethro.dev/posts/how_to_take_smart_notes_org/ and https://emacsconf.org/2020/talks/17/ . Since current org-roam (post-v2) uses the normal org-mode "id" form, you can make any "headline" into an roam-registered node. You could then split your long derivations into different headlines, where the body of the headline or descriptive text could refer to prior nodes, but any latex is inserted using org latex blocks https://orgmode.org/worg/org-contrib/babel/languages/ob-doc-LaTeX.html . You've maybe already considered this (and I wouldn't be surprised if local references were easier to do in straight latex), but org-roam-bibtex is really nice for interfacing with your citation system for other papers.
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Starting my PhD and keeping my lab notebook in org-mode!
I think you should also look org-roam and org-roam-bibtex (I can't configure org-roam-bibtex properly because I'm on Windows).
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Write research paper notes/summaries in emacs
Taking this one step further, if you use the excellent org-roam package (which if you don't you should definitely check it out, its great for note-taking), there is a package called org-roam-bibtex which communicates very well with the aforementioned packages. With it, you can create bibliographic notes as part of your org-roam repository from their bibtex entry and initialize the file to also include a link to the pdf from org-noter. Once you learn it, its a very powerful and streamlined workflow for working with articles which makes your life very easy. Its quite a bit of reading to do on your end on how to make all these work together, but trust me its worth it.
- Org-roam-bibtex: Org Roam integration with bibliography management software
- Help with getting Work Flow Right
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Errors when creating new node
Have you followed the discussion here: https://github.com/org-roam/org-roam-bibtex/issues/159
- Reminder: org-roam and org-roam-bibtex will be upgraded to V2 the next Friday or Saturday (depending of your time zone). This upgrade is incompatible with the current configurations. Don't forget to upgrade yours.
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Question about the org-roam redesign
If you want to use it primarily for literature notes, maybe you should have a look at the current state of https://github.com/org-roam/org-roam-bibtex/tree/org-roam-v2 before deciding.
- Easy Annotated Bibliographies with org-roam-bibtex?
citeproc-el
- How to add spacing between the bibliography references?
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What is the org-cite bibliography token for rendering bibliographies in org-exported documents
As far as I know there is no support for docx export (at least without external tools like pandoc), but if ODT is an option for this kind of embedding metadata within the citations then feel free to open a feature request at the citeproc-el repository and I'll try to look into the problem.
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Is it possible to integrate bibliographic information into org files in a selfcontained way?
Well, it is sort of doable with the csl org-cite export processor and citeproc-el if one uses the org-bibtex export format, see https://github.com/andras-simonyi/citeproc-el/wiki/Inline-bibliographies-with-Org. The problem is that the rest of the ecosystem doesn't really support org-bibtex, see, e.g., this discussion: https://github.com/bdarcus/citar/issues/397
- citeproc-el: A CSL 1.01 Citation Processor for Emacs.
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How to use style files in org-ref
This link refers to a very old, deprecated citeproc that was experimental in org-ref v2. It no longer exists in v3, and has been replaced by https://github.com/andras-simonyi/citeproc-el. The newer documentation is at https://github.com/jkitchin/org-ref/blob/master/org-ref.org#other-formats-using-csl.
What are some alternatives?
doom-emacs-config - Doom Emacs configuration finely tuned for "distraction-free' academic writing
helm-bibtex - Search and manage bibliographies in Emacs
citeproc-org - Renders Org-mode citations in CSL styles using citeproc-el.
md-roam - Use Org-roam with markdown files by adding Md-roam as a plug-in. Mix org and markdown files in a single Org-roam database.
styles - Official repository for Citation Style Language (CSL) citation styles.
Zero-to-Emacs-and-Org-roam - Step by step guide from zero to installing and setting up Emacs and Org-roam on Windows 10
doom-emacs - An Emacs framework for the stubborn martian hacker [Moved to: https://github.com/doomemacs/doomemacs]
citar - Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.
spacemacs - A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!
vulpea - A collection of functions for note taking based on `org` and `org-roam`.
org-bib-mode - An Emacs minor mode for literate & annotated bibliography