neuronika
Rust-Bio
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neuronika | Rust-Bio | |
---|---|---|
19 | 9 | |
1,033 | 1,500 | |
1.3% | 2.7% | |
0.0 | 6.7 | |
over 1 year ago | 21 days ago | |
Rust | Rust | |
Apache License 2.0 | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
neuronika
- This year I tried solving AoC using Rust, here are my impressions coming from Python!
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Deep Learning in Rust: Burn 0.4.0 released and plans for 2023
Also perhaps comparing to Neuronika.
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Making a better Tensorflow thanks to strong typing
how does it compare with https://github.com/spearow/juice, https://github.com/neuronika/neuronika and https://github.com/spearow/juice?
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[D] To what extent can Rust be used for Machine Learning?
Check where and how this struct is used. https://github.com/neuronika/neuronika/blob/variable-rework/neuronika-variable/src/history.rs
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What do I need for an ML/DL based scripting language in Rust?
Also you can take a look at neuronika.
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ML in Rust
There is also https://github.com/neuronika/neuronika
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Enzyme: Towards state-of-the-art AutoDiff in Rust
I have a question: as the maintainer of [neuronika](https://github.com/neuronika/neuronika), a crate that offers dynamic neural network and auto-differentiation with dynamic graphs, I'm looking at a future possible feature for such framework consisting in the possibility of compiling models, getting thus rid of the "dynamic" part, which is not always needed. This would speed the inference and training times quite a bit.
- Any role that Rust could have in the Data world (Big Data, Data Science, Machine learning, etc.)?
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What sort of mature, open-source libraries do you feel Rust should have but currently lacks?
If you like autograd you will love neuronika
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bhtsne 0.5.0, now 5.6x faster on a 4 core machine, plus a summary of my Rust journey (so far)
After reading most of the book, I wanted to get my hands dirty. My initial idea was to build a small machine learning framework but I deemed it to be too difficult if not impossible for me at the time. (Now, neuronika would have something to say). When gathering the bibliography for my thesis, I recalled to have stumbled upon a particular algorithm, t-SNE, whom I liked very much. I found the idea behind it to be very clever and elegant (t-SNE it's still one of my favorite algorithms, together with backprop and SOM, I find manifold learning fascinating in general). "So be it", I said, and I began writing a mess of a code, that was basically a translation of the C++ implementation. Boy was it bad.
Rust-Bio
- Bioinformatics Data Structures in Rust
- Bioinformatics with Rust
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bioinformatic libraries and zig?
Does anyone know of zig native libraries for bioinformatics (here is a Rust example https://rust-bio.github.io/ )? It seems as though one could pull in a lot of bioinformatics C libraries such as done with https://github.com/brentp/hts-zig.
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Proteomics search engine written in Rust
e.g. Rust-Bio
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What are your top 3-5 programming languages and why?
I would start with the book and then rust-bio library. Rust is a pretty low level language compared to R/Python. It’s an especially good fit for writing efficient tools that make use of the kinds of algorithms / data structures that are implemented in rust-bio.
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I have to admit. The free code camp course is a bit more sparing than I would have preferred. How did everyone learn Rust?
Absolutely! It already is, e.g., https://github.com/rust-bio/rust-bio. I'm moving from the academia/nonprofit world into industry bioinformatics, and I intend to use Rust as much as possible. I've already replaced as much of my Python as possible with Rust. I feel I'm able to create larger, more complex programs with Rust because I have the compiler to keep me from making common mistakes that are so easy to make in dynamically typed languages like Perl and Python. It might take longer to write a program initially, but I've started to create a library of functions I can paste together to do things like parse a positive integer, find a bunch of files with a certain file extension, search through data for a pattern, parse CSV files, etc. Writing my latest book has provided even more common patterns I keep finding I use over and over.
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Is learning Rust and systems programming through the books Rust in Action and Crafting Interpreters a good idea?
I think there is huge potential for Rust in bioinformatics, and there are already some great projects like https://rust-bio.github.io/. It seems industry is also hiring for these skills. This Nature article is a little old, but also covers why people in the field are looking for greater safety and performance. It's relatively easy to write a Python program to do bio stuff, but it's also very easy to get lots of things wrong or for the resulting program to be slow and/or impossible to extend and maintain. In the long run, I think it makes sense to write in Rust. Perl was king in biofx when I started, and I would not have predicted it being displaced by Python, so there's good reason to believe that Python may one day be eclipsed by Rust.
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Whats your favourite open source Rust project that needs more recognition?
Well, someone mentioned https://rust-bio.github.io/
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How can one make Rust excel in the Sciences
So generally stuff in this maths/numerical space. The term is a bit deceptive because it rarely means domain-specific science libraries like rust-bio even thought that might be what you think when you hear "scientific computing".
What are some alternatives?
rust-ndarray - ndarray: an N-dimensional array with array views, multidimensional slicing, and efficient operations
dash - Data Apps & Dashboards for Python. No JavaScript Required.
clblast-rs - clblast bindings for rust
kanidm - Kanidm: A simple, secure and fast identity management platform
autograph - Machine Learning Library for Rust
clickhouse-rs - Asynchronous ClickHouse client library for Rust programming language.
are-we-learning-yet - How ready is Rust for Machine Learning?
GeoRust - Geospatial primitives and algorithms for Rust
justrunmydebugger - just run my debugger. see package here: https://build.opensuse.org/package/show/home:ila.embsys:justrunmydebugger/justrunmydebugger
Rhai - Rhai - An embedded scripting language for Rust.
tractjs - Run ONNX and TensorFlow inference in the browser.
cycle - Modern and safe symbolic mathematics