ncov
Nextstrain build for novel coronavirus SARS-CoV-2 (by nextstrain)
nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement (by nextstrain)
| ncov | nextclade | |
|---|---|---|
| 13 | 2 | |
| 1,351 | 199 | |
| 0.1% | 2.5% | |
| 8.4 | 9.8 | |
| 8 days ago | 9 days ago | |
| Python | TypeScript | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ncov
Posts with mentions or reviews of ncov.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-06-16.
- 其实新冠早就疯狂变异了,只是为了不影响公共舆论,不给新病毒取名而已.
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Coronavirus Datsets
Mutations (thanks /u/Mynewestaccount34578)
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Does the original strain of Covid still exist in the wild or has it been completely replaced by more recent variants?
Nextstrain.org has been using genomic epidemiology to track SARS-CoV2 and it’s evolution since the beginning of the pandemic. Looks like the original strain and even some more recent variants have become virtually undetectable. https://nextstrain.org/ncov/
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Not Vaxxed and got Omnicron
https://nextstrain.org/ncov all of that data comes from identifying samples and doing full sequences.
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Megathread #67: SARS-CoV-2/COVID-19 Discussion. 1/12/2022
Nextstrain
- COVID Omicron variant constructed sequence according to Nextstrain's specifications.
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Covid19 RNA sequence (Wuhan/Hu-1/2019) composed with the most universal and explicit symbol of death
In this Covid19 RNA sequence (Wuhan/Hu-1/2019), there are exactly 499 nucleotides. (Data source1 : https://www.ncbi.nlm.nih.gov/nuccore/1798174254 | Data source2 : https://github.com/nextstrain/ncov/blob/master/data/references_sequences.fasta)
- Pfizer expands recall of anti-smoking drug over carcinogen presence
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There is no law higher than the Natural law. Nature’s law :1 If you cannot protect it, then you don’t deserve it. This law is on full display with the evolutionary arms race that has taken place over billions of years. If you cannot protect yourself from predators, then you don’t deserve to survive.
You could try getting in touch with these guys
nextclade
Posts with mentions or reviews of nextclade.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-12-12.
- Why does musl make my Rust code so slow? (2020)
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
What are some alternatives?
When comparing ncov and nextclade you can also consider the following projects:
covid-19-data - A repository of data on coronavirus cases and deaths in the U.S.
pangolin - Software package for assigning SARS-CoV-2 genome sequences to global lineages.