nanopolish VS opensim-core

Compare nanopolish vs opensim-core and see what are their differences.

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nanopolish opensim-core
1 1
542 742
- 1.6%
5.2 9.9
9 months ago 5 days ago
C++ C++
MIT License Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

nanopolish

Posts with mentions or reviews of nanopolish. We have used some of these posts to build our list of alternatives and similar projects.
  • ONT Frustration
    1 project | /r/bioinformatics | 9 Apr 2023
    I use nanopore for de novo methylation motif detection and some ssDNA signal comparison. Tombo has not worked with R10 data for me, so I’ll have to revisit that. Nanocompore uses Nanopolish for signal comparison, which does not support R10 data (see github).

opensim-core

Posts with mentions or reviews of opensim-core. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing nanopolish and opensim-core you can also consider the following projects:

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

mfem - Lightweight, general, scalable C++ library for finite element methods

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

virtualbow - Software for designing and simulating bows

bowtie - An ultrafast memory-efficient short read aligner

qvge - Qt Visual Graph Editor

salmon - 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Simbody - High-performance C++ multibody dynamics/physics library for simulating articulated biomechanical and mechanical systems like vehicles, robots, and the human skeleton.

stellarium - Stellarium is a free GPL software which renders realistic skies in real time with OpenGL. It is available for Linux/Unix, Windows and macOS. With Stellarium, you really see what you can see with your eyes, binoculars or a small telescope.

awesome-biomechanics - A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

FreeCAD - This is the official source code of FreeCAD, a free and opensource multiplatform 3D parametric modeler.