mirdeep2
deepvariant
| mirdeep2 | deepvariant | |
|---|---|---|
| 1 | 5 | |
| 129 | 3,085 | |
| 0.0% | 1.2% | |
| 2.5 | 9.1 | |
| 6 months ago | about 2 months ago | |
| Perl | Python | |
| GNU General Public License v3.0 only | BSD 3-clause "New" or "Revised" License |
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Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
mirdeep2
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miRDeep2_core_algorithm.pl error
https://easyupload.io/hxygao
deepvariant
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
salmon - 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
galaxy - Data intensive science for everyone.
OTTO - Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
masurca
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
scanpy - Single-cell analysis in Python. Scales to >1M cells.
miRPV - An Automated pipeline for miRNA identification and validation
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
alevin-fry - 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Biopython - Official git repository for Biopython (originally converted from CVS)
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
slivar - genetic variant expressions, annotation, and filtering for great good.