libsequence vs SeqAn

libsequence

libsequence: a C++ class library for evolutionary genetic analysis (by molpopgen)

Biology

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SeqAn

SeqAn's official repository. (by seqan)

Biology Cpp14 Bioinfomatics High Performance Simd sequence-alignments Alignment Bwt Indexing Suffixarray Htslib sam-bam Fasta fastq-format Blast Seqan

Source Code

seqan.de

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libsequence		SeqAn
	Project
-	Mentions	-
49	Stars	457
-	Growth	2.0%
0.0	Activity	7.3
almost 4 years ago	Latest Commit	17 days ago
C++	Language	C++
GNU General Public License v3.0 only	License	GNU General Public License v3.0 or later

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

libsequence

Posts with mentions or reviews of libsequence. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning libsequence yet.
Tracking mentions began in Dec 2020.

SeqAn

Posts with mentions or reviews of SeqAn. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning SeqAn yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing libsequence and SeqAn you can also consider the following projects:

Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Wham - Structural variant detection and association testing

deepchem - Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

kanzi-cpp - Fast lossless data compression in C++

sdsl-lite - Succinct Data Structure Library 3.0

fstalign - An efficient OpenFST-based tool for calculating WER and aligning two transcript sequences.

tabulate - Table Maker for Modern C++

seqan3 - The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

ugrep-indexer - A monotonic indexer to speed up grepping by >10x

libsais - libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.