libBigWig VS kent

And that is using libBigWig which specifically references Kent Utils.

22 https://genome.ucsc.edu/

His response to the points you made: "A fusion entails a mass deletion of the site within it, the fusion site doesn't encompass the entire DDX11L2 gene but covers the first intron in its sequence. http://genome.ucsc.edu/".

Your first and second link seem to be too complex for me, in that second link the male bonobo isn't complete and only female bobobos are available so far. What do you think of this https://genome.ucsc.edu/

The easiest thing to do is to go the the UCSC genome browser (genome.ucsc.edu) and look at the Encode transcription factor binding data around your gene. You can also look for motifs by picking out a region of the gene and sending it to MEME, but actually looking at the experimental results is more reliable.

UCSC Genome Browser

I'm looking to write some low level tools that interface with bigWig files and I'm having difficulty finding a technical summary of exactly what the contents of the file format are. I've been reading the KentTools source code in C which has modules to create and edit BWs. I've found a brief description of the sections and headers in bwgInternal.h here but the lower level modules for actually writing to disk are less well documented. I'm very happy to keep digging through the code and experimenting but was wondering if anyone knows of a better summary of what the various parts of the file expect, in English rather than in code. Thanks.

I mean if you want to work on it it is open source as apart of Kent https://github.com/ucscGenomeBrowser/kent