krm
K-mer counter implementation in Rust using rust-bio (by suchapalaver)
biobear
Work with bioinformatic files using Arrow, Polars, and/or DuckDB (by wheretrue)
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
krm
Posts with mentions or reviews of krm.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-09-04.
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Help needed getting started with concurrency, making use of my cores …
You really helped me understand it was that simple to get started. Thank you. If it's useful or interesting to anyone you can see what I did to get it working on the github repo: https://github.com/suchapalaver/krm
biobear
Posts with mentions or reviews of biobear.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-04-24.
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biobear -- python package with minimal dependencies for bioinformatic file parsing and querying using rust and polars as the backend
Last time I'll try, but again you aren't understanding things and with all due respect seem to be stuck in the past. It works fine on Windows w/o maturin, but you're so keen to say something w/o understanding you're missing important details... look again and then look where the other job failed... https://github.com/wheretrue/biobear/actions/runs/4791174939/jobs/8521250054... if you're having issues with it please file an issue on github.
What are some alternatives?
When comparing krm and biobear you can also consider the following projects:
krust - counts k-mers, written in rust
cramino - A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
rust - Empowering everyone to build reliable and efficient software.