Biobear Alternatives

Similar projects and alternatives to biobear based on common topics and language

adam

3 967 6.1 Scala biobear VS adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
cramino

1 110 7.7 Rust biobear VS cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
polars

144 26,218 10.0 Rust biobear VS polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust
fastexcel

2 68 8.7 Rust biobear VS fastexcel

A Python wrapper around calamine (by ToucanToco)
ibis

23 4,208 10.0 Python biobear VS ibis

the portable Python dataframe library
pydna

1 152 9.4 Jupyter Notebook biobear VS pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
krust

5 29 5.4 Rust biobear VS krust

counts k-mers, written in rust
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better biobear alternative or higher similarity.

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biobear reviews and mentions

Posts with mentions or reviews of biobear. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-24.

biobear -- python package with minimal dependencies for bioinformatic file parsing and querying using rust and polars as the backend
5 projects | /r/bioinformatics | 24 Apr 2023

Last time I'll try, but again you aren't understanding things and with all due respect seem to be stuck in the past. It works fine on Windows w/o maturin, but you're so keen to say something w/o understanding you're missing important details... look again and then look where the other job failed... https://github.com/wheretrue/biobear/actions/runs/4791174939/jobs/8521250054... if you're having issues with it please file an issue on github.