htsget-mvp
krust
| htsget-mvp | krust | |
|---|---|---|
| 2 | 5 | |
| 36 | 29 | |
| - | - | |
| 8.9 | 5.4 | |
| 1 day ago | 8 months ago | |
| Rust | Rust | |
| MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
htsget-mvp
krust
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Feedback on a K-mer counter written in Rust
I’m not a bioinformatician, I’m just a software engineer. I made krust because I wanted to learn Rust. I’ve kept working on it and I’m surprised it has as many as 22 stars on GitHub, from people who seem to be in bioinformatics for the most part. So it seems like it’s somewhat interesting/useful. But I don’t know what would make this more/less useful for a specialist.
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What are you using Rust for?
Been learning Rust by making a k-mer counter — bioinformatics 101 tool for counting the frequency of substrings of length k in DNA data: https://github.com/suchapalaver/krust. Would love feedback.
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I wrote a fast kmer counter in Rust called krust. I would love for people to get use out of it and for me to get feedback! Thanks and all the best!
Adding all suggestions as issues on github ;) https://github.com/suchapalaver/krust/issues/6
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Help needed getting started with concurrency, making use of my cores …
Thanks again for your suggestion. In case you’re interested, I followed up and used rayon in my program: https://github.com/suchapalaver/krust/blob/main/src/lib.rs. All the best!
What are some alternatives?
fasten - :construction_worker: Fasten toolkit, for streaming operations on fastq files
nvim-matrix-bot - Just a bot for Neovim's Matrix room(s)
sage - Proteomics search & quantification so fast that it feels like magic
winsafe - Windows API and GUI in safe, idiomatic Rust.
Rust-Bio - This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
calligrapher-ai - Handwriting Synthesis with RNNs ✍🏻
s3-rust-noodles-bam - Rust+AWS+S3+Lambda+Noodles = Serverless Bioinformatics
image-shrinker-lite - Drag-and-drop image compression app.
gccontent-benchmark - Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
shiba - Display a random Shiba from your terminal whenever you feel the need to. Because why not?
swiki - Minimal Rust + Markdown wiki
justrunmydebugger - just run my debugger. see package here: https://build.opensuse.org/package/show/home:ila.embsys:justrunmydebugger/justrunmydebugger