I wrote a fast kmer counter in Rust called krust. I would love for people to get use out of it and for me to get feedback! Thanks and all the best!

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
kmer kmer-counting k-mer k-mers k-mer-counting

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  • krust

    counts k-mers, written in rust

    • Adding all suggestions as issues on github ;) https://github.com/suchapalaver/krust/issues/6

  • kmer-cnt

    Code examples of fast and simple k-mer counters for tutorial purposes

    • See also this repo.

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  • kcounter

    A simple package for counting DNA k-mers in Python. Written in Rust.

    • That's very cool! I also wrote a k-mer counter in Rust some time ago, but it is distributed as a Python library: https://github.com/apcamargo/kcounter

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