hts.cr
HTSlib bindings for Crystal (by bio-cr)
cyvcf2
cython + htslib == fast VCF and BCF processing (by brentp)
| hts.cr | cyvcf2 | |
|---|---|---|
| 1 | 1 | |
| 10 | 357 | |
| - | - | |
| 5.9 | 7.7 | |
| 3 months ago | 2 months ago | |
| Crystal | Cython | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
hts.cr
Posts with mentions or reviews of hts.cr.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-18.
-
Show a Tanuki with Samtools!
First, let's make sure that Samtools can be built successfully. Note that the build requires htslib and other dependencies. In my case, I put htslib directory in the same directory as samtools because I build htslib by myself for htslib binding of Crystal language which I make for my personal interest. If you put htslib here, samtools can detect it automatically. htslib requires submodules git submodule update -i --recursive. If you get stuck, please google it. It would be safer to check out a stable tag git checkout 1.16.1, and switch to a new branch git switch tanuki. It is up to you.
cyvcf2
Posts with mentions or reviews of cyvcf2.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How can I index and query my VCF files by an INFO tag?
If you in command line, bcftools. If in python, https://github.com/brentp/cyvcf2
What are some alternatives?
When comparing hts.cr and cyvcf2 you can also consider the following projects:
zstd.cr - Crystal bindings to the Zstandard (zstd) compression library
pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
sambamba - Tools for working with SAM/BAM data
htslib - C library for high-throughput sequencing data formats
chatnoir-resiliparse - A robust web archive analytics toolkit
truvari - Structural variant toolkit for VCFs
ruby-htslib - HTSlib bindings for Ruby
Hail - Cloud-native genomic dataframes and batch computing
bam-filter - Use simple expressions to filter a BAM/CRAM file