hh-suite
foldseek
hh-suite | foldseek | |
---|---|---|
2 | 1 | |
499 | 642 | |
1.8% | 6.7% | |
0.0 | 9.3 | |
9 months ago | 7 days ago | |
C | C | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
hh-suite
foldseek
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AI predicts shape of nearly every known protein
"Some sophisticated applications of the expanded AlphaFold database might also depend on downloading its entire 23 terabyte contents, which won’t be feasible for many teams, Steinegger says. Cloud-based storage could also prove costly. Steinegger has co-developed a software tool called FoldSeek that can quickly find structurally similar proteins and which should be able to squash the AlphaFold data down considerably."
[FoldSeek Search](https://search.foldseek.com/search)
[Github:FoldSeek](https://github.com/steineggerlab/foldseek)
What are some alternatives?
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite
bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
DAGSfM - Distributed and Graph-based Structure from Motion. This project includes the official implementation of our Pattern Recognition 2020 paper: Graph-Based Parallel Large Scale Structure from Motion.
direct-io - Direct IO helpers for block devices and regular files on FreeBSD, Linux, macOS and Windows.
MooseFS - MooseFS – Open Source, Petabyte, Fault-Tolerant, Highly Performing, Scalable Network Distributed File System (Software-Defined Storage)
cglm - 📽 Highly Optimized 2D / 3D Graphics Math (glm) for C
mars - Asynchronous Block-Level Storage Replication
seqtk - Toolkit for processing sequences in FASTA/Q formats