Hail
streamlit
Hail | streamlit | |
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5 | 258 | |
938 | 31,868 | |
1.0% | 2.4% | |
9.8 | 9.8 | |
1 day ago | 5 days ago | |
Python | Python | |
MIT License | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Hail
- We're wasting money by only supporting gzip for raw DNA files
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Software engineers: consider working on genomics
I don't have any funding to hire right now, but I'm always happy to chat about the industry and my experience building Hail (https://hail.is, https://github.com/hail-is/hail), a tool widely used by folks with large collections of human sequences.
The other posters are not wrong about compensation. Total compensation is off by a factor of two to three.
However, it is absolutely possible to work with a group of top-notch engineers on serious distributed systems & compilers in service of an excellent scientific-user experience. I know because I do. We are lucky to have a PI who respects and hires and diversity of expertise within his lab.
I enjoy being deeply embedded with our users. I do not have to guess what they need or want because I help them do it every day.
I also enjoy enmeshing engineering with statistics, mathematics, and biology. Work is more interesting when so many disciplines conspire towards the end of improved human health.
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AWS doesn't make sense for scientific computing
I think this post is identifying scientific computing with simulation studies and legacy workflows, to a fault. Scientific computing includes those things, but it also includes interactive analysis of very large datasets as well as workflows designed around cloud computing.
Interactive analysis of large datasets (e.g. genome & exome sequencing studies with 100s of 1000s of samples) is well suited to low-latency, server-less, & horizontally scalable systems (like Dremel/BigQuery, or Hail [1], which we build and is inspired by Dremel, among other systems). The load profile is unpredictable because after a scientist runs an analysis they need an unpredictable amount of time to think about their next step.
As for productionized workflows, if we redesign the tools used within these workflows to directly read and write data to cloud storage as well as to tolerate VM-preemption, then we can exploit the ~1/5 cost of preemptible/spot instances.
One last point: for the subset of scientific computing I highlighted above, speed is key. I want the scientist to stay in a flow state, receiving feedback from their experiments as fast as possible, ideally within 300 ms. The only way to achieve that on huge datasets is through rapid and substantial scale-out followed by equally rapid and substantial scale-in (to control cost).
[1] https://hail.is
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Ask HN: Who is hiring? (July 2021)
Broad Institute of MIT and Harvard | Cambridge, MA | Associate Software Engineer | Onsite
We are seeking an associate software engineer interested in contributing to an open-source data visualization library for analyzing the biological impact human genetic variation. You will contribute to projects like gnomAD (https://gnomad.broadinstitute.org), the world's largest catalogue of human genetic variation used by hundreds of thousands of researchers and help us scale towards millions of genomes in the coming years. We are also developing next-generation tools for enabling genetic analyses of large biobanks across richly phenotyped individuals (https://genebass.org). In this role you will gain experience developing data-intensive web applications with Typescript, React, Python, Terraform, Google Cloud Platform, and will make use of the scalable data analysis library Hail (https://hail.is). Key to our success is growing a strong team with a diverse membership who foster a culture of continual learning, and who support the growth and success of one another. Towards this end, we are committed to seeking applications from women and from underrepresented groups. We know that many excellent candidates choose not to apply despite their capabilities; please allow us to enthusiastically counter this tendency.
Please provide a CV and links previous work or projects, ideally with contributions visible on Github.
email: [email protected]
streamlit
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Developing a Generic Streamlit UI to Test Amazon Bedrock Agents
I decided to use Streamlit to build the UI as it is a popular and fitting choice. Streamlit is an open-source Python library used for building interactive web applications specially for AI and data applications. Since the application code is written only in Python, it is easy to learn and build with.
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Creando Subtítulos Automáticos para Vídeos con Python, Faster-Whisper, FFmpeg, Streamlit, Pillow
Streamlit (https://streamlit.io/)
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PySheets – Spreadsheet UI for Python
Does it need to be live (i.e when database or underlying spreadsheet updates does it need to be reflected in real time on the dashboard) or are you ok with static display.
Live updating data is a pain I've messed around using javascript to force refresh html iframes on a timer. But I was never really satisfied with this. I've heard you can do things with websockets but that is starting to get too complicated for me (I'm not a programmer).
For static stuff one of the data scientists in my org pointed me to Streamlit (https://streamlit.io/) it's a python package I found very easy to use. Can easily combine SQL with CSV imports and display them all on one dashboard. Can use forms toggle butotns etc to control the display.
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Building an Email Assistant Application with Burr
Note that there are many tools that make this easier/simpler to prototype, including chainlit, streamlit, etc… The backend API we built is amenable to interacting with them as well.
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Creating a Sales Analysis Application with Streamlit: A Practical Approach to Business Intelligence
2.-Go to https://streamlit.io, log in, and create a new app from your GitHub repository.
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🦙 Llama-2-GGML-CSV-Chatbot 🤖
Developed using Langchain and Streamlit technologies for enhanced performance.
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Python dev considering Electron vs. Kivy for desktop app UI
Hello,
Have you ever seen the https://streamlit.io/ ? I think this is what you are looking for.
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Show HN: Buefy Web Components for Streamlit
While building dashboards in Streamlit, I found myself really missing Buefy's (Bulma) modern web components.
Specially due to the inability to add new values to Streamlit's multiselect [1], some missing controls like a polished image carousel [2] or a highly customizable data table.
Long story short, we put together streamfy (Streamlit + Buefy) as an MIT licensed project in GitHub to bring Buefy to Streamlit.
Demo: https://streamfy.streamlit.app
All the form components are implemented, missing half of other non-form UX components. There is plenty of room for PRs, testing, feedback, documentation, example, etc.
Please send issues and contributions to GitHub project [3] and general feedback to X / Twitter [4]
Thanks!
[1] https://github.com/streamlit/streamlit/issues/5348
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Simplify Web App Development: Code Lite, Create Big!
Here's your savior, let's welcome Streamlit.
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Show HN: Hyperdiv – Reactive, immediate-mode web UI framework for Python
Looks cool. How do you see this differing from streamlit? https://streamlit.io/
What are some alternatives?
GridScale - Scala library for accessing various file, batch systems, job schedulers and grid middlewares.
PyWebIO - Write interactive web app in script way.
Vegas - The missing MatPlotLib for Scala + Spark
gradio - Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!
metorikku - A simplified, lightweight ETL Framework based on Apache Spark
nicegui - Create web-based user interfaces with Python. The nice way.
Scoozie - Scala DSL on top of Oozie XML
superset - Apache Superset is a Data Visualization and Data Exploration Platform
Jupyter Scala - A Scala kernel for Jupyter
reflex - 🕸️ Web apps in pure Python 🐍
Summingbird - Streaming MapReduce with Scalding and Storm
PySimpleGUI - Python GUIs for Humans! PySimpleGUI is the top-rated Python application development environment. Launched in 2018 and actively developed, maintained, and supported in 2024. Transforms tkinter, Qt, WxPython, and Remi into a simple, intuitive, and fun experience for both hobbyists and expert users.