ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees (by YuLab-SMU)
esquisse
RStudio add-in to make plots interactively with ggplot2 (by dreamRs)
ggtree | esquisse | |
---|---|---|
2 | 4 | |
801 | 1,743 | |
1.0% | 0.7% | |
6.5 | 9.0 | |
30 days ago | 14 days ago | |
R | R | |
- | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ggtree
Posts with mentions or reviews of ggtree.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Advice about R for bioinformatics (ggtree and metadata)
I don’t have a lot of experience with this particular package, but if a package provides vignettes I like to look through those. ggtree seems to provide an entire book, which may be helpful to you. You could also look at the examples in the docs, or other scripts people have written. If you find some, read through them line by line and try to understand what they’re doing. Run each line and look at what the output is. See if you can reproduce the example analyses on your own, maybe with different data. That’ll help you learn the packages with more training wheels than just striking out on your own, and then once you get more comfortable you should be able to branch out more.
-
Exhaustively list all of a function's aes params?
I'd suggest digging into the code, if you're comfortable with it. The package is available up on github and also links to a reference book from the package author about how to use it. Looks like it has a few more examples than the tutorial you linked in another comment.
esquisse
Posts with mentions or reviews of esquisse.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-07-20.
- esquisse: RStudio add-in to make plots interactively with ggplot2 {R}
-
New to ggplot2 - How do I change the color of some frequency plots so that the colors are distinct and do not get overpowered by the background? I changed the theme to dark because the yellow plot was nearly invisible on white/ gray. [code block in comments]
You should post your code so people can specifically see what you are doing, but in general you can do a color option in geom_line. If you don't use ggplot frequently then I'd recommend checking out the esquisse plugin at: https://github.com/dreamRs/esquisse This allows you to use a gui to set your ggplot options.
-
Examples of R packages which include a Shiny app?
esquisse is an RStudio Addin that is a package and also a shiny app.
-
[R] Front-end for ggplot within RStudio?
The link if you're curious: https://github.com/dreamRs/esquisse