geomstats
condo-adapter
| geomstats | condo-adapter | |
|---|---|---|
| 1 | 2 | |
| 1,159 | 3 | |
| 1.8% | - | |
| 9.8 | 3.7 | |
| 9 days ago | about 1 year ago | |
| Jupyter Notebook | Jupyter Notebook | |
| MIT License | Creative Commons Attribution Share Alike 4.0 |
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geomstats
condo-adapter
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Great thread on the importance of EDA and confounder adjustment prior to differential expression analysis (RNA-seq)
Fwiw, last week I released a new method for batch correction that conditions on confounders which are correlated with the batch variable. Preprint here: https://arxiv.org/abs/2203.12720 and Python code here: https://github.com/calvinmccarter/condo-adapter.
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New method for batch correction confounded by outcome distribution
Software (Python) is here: https://github.com/calvinmccarter/condo-adapter
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