gemelli
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets. (by biocore)
CTFd
CTFs as you need them [Moved to: https://github.com/CTFd/CTFd] (by isislab)
| gemelli | CTFd | |
|---|---|---|
| 2 | 1 | |
| 65 | 3,703 | |
| - | - | |
| 7.0 | 8.4 | |
| 21 days ago | over 2 years ago | |
| Python | Python | |
| BSD 3-clause "New" or "Revised" License | Apache License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gemelli
Posts with mentions or reviews of gemelli.
We have used some of these posts to build our list of alternatives
and similar projects.
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What's going on with the widespread use of the log(X + 1) transform for NGS data?
You might want to look into the robust CLR in gemelli and the associated papers. Basically, it only does the CLR on the cells with values, then does sparse matrix completion ML (a la recommendation engines) to fill in the nulls. The devil is in the details of the ML algorithm, but at least it’s not deep learning. I do get pretty nice plots and correlations from the output distance matrices, so there is that.
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Understanding why CLR followed by correlation is not compositionally-valid
You might want to look into Gemelli for something that tries to thread that needle.
CTFd
Posts with mentions or reviews of CTFd.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-11-13.
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Awesome CTF : Top Learning Resource Labs
CTFd - Platform to host Jeopardy-style CTFs from ISISLab, NYU Tandon.
What are some alternatives?
When comparing gemelli and CTFd you can also consider the following projects:
CTFd - CTFs as you need them
Metasploit - Metasploit Framework
snoop - Snoop — инструмент разведки на основе открытых данных (OSINT world)
ecs154a-winter20 - Course files for ECS 154A in Winter Quarter 2020.
gef - GEF (GDB Enhanced Features) - a modern experience for GDB with advanced debugging capabilities for exploit devs & reverse engineers on Linux
pwntools - CTF framework and exploit development library
pwndbg - Exploit Development and Reverse Engineering with GDB Made Easy
Ciphey - ⚡ Automatically decrypt encryptions without knowing the key or cipher, decode encodings, and crack hashes ⚡