gemelli
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets. (by biocore)
gef
GEF (GDB Enhanced Features) - a modern experience for GDB with advanced debugging capabilities for exploit devs & reverse engineers on Linux (by hugsy)
gemelli | gef | |
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2 | 15 | |
65 | 6,516 | |
- | - | |
7.0 | 8.4 | |
22 days ago | 4 days ago | |
Python | Python | |
BSD 3-clause "New" or "Revised" License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gemelli
Posts with mentions or reviews of gemelli.
We have used some of these posts to build our list of alternatives
and similar projects.
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What's going on with the widespread use of the log(X + 1) transform for NGS data?
You might want to look into the robust CLR in gemelli and the associated papers. Basically, it only does the CLR on the cells with values, then does sparse matrix completion ML (a la recommendation engines) to fill in the nulls. The devil is in the details of the ML algorithm, but at least it’s not deep learning. I do get pretty nice plots and correlations from the output distance matrices, so there is that.
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Understanding why CLR followed by correlation is not compositionally-valid
You might want to look into Gemelli for something that tries to thread that needle.
gef
Posts with mentions or reviews of gef.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-11-05.
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Beej's Quick Guide to GDB (2009)
There is also GEF, which is widely used by the reverse engineering and CTF community.
https://github.com/hugsy/gef
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How do you use gdb without the tui? Are there advantages? Or just describe your GDB workflow.
If you are on Linux, install GEF and be happy.
- TF2 on Linux is running incredibly poorly, reporting 1200%+ CPU usage. Steam also appears to have some sort of memleak and infinite loop/callback going on leading to absurd CPU usage over time.
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Any good and easy-to-use C debuggers?
If you are in linux, I recomend none of them (haha) because you should get more used to GDB a little bit. You just need to install some good visualizers likes GEF, for example.
- Emulating an emulator inside itself. Meet Blink
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Are there any cpu emulators that could help me learn i386 assembly?
https://github.com/hugsy/gef, https://hugsy.github.io/gef/, https://hugsy.github.io/gef/commands/context/ ("Values in red indicate that this register has had its value changed since the last time execution stopped.")
- What plugins do you recommend for ExploitDev or RE and why?
- Awesome TUI tools
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Fully Dockerized Linux kernel debugging environment
The attached debugger is not just raw GDB but is using https://hugsy.github.io/gef/ to make debugging less of a pain. It's still not perfect but helps plenty already.
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Debugging with GDB
I still struggle with GDB but my excuse is that I seldom use it.
When I was studying reverse engineering though, I came across a really cool kit (which I've yet to find an alternative for lldb, which would be nice given: rust)
I'd recommend checking it out, if for no other reason than it makes a lot of things really obvious (like watching what value lives in which register).
https://github.com/hugsy/gef
LLDB's closest alternative to this is called Venom, but it's not the same at all. https://github.com/ovh/venom