gccontent-benchmark
htsget-mvp
| gccontent-benchmark | htsget-mvp | |
|---|---|---|
| 8 | 2 | |
| 55 | 36 | |
| - | - | |
| 0.0 | 8.9 | |
| over 1 year ago | 10 days ago | |
| Rust | Rust | |
| MIT License | MIT License |
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gccontent-benchmark
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OCaml 5.0 release (including multicore and effects)
So, can someone send me a PR with an OCaml implementation of "my" gc-content benchmark?
https://github.com/samuell/gccontent-benchmark
:D
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Performance comparison: counting words in Python, C/C++, Awk, Rust, and more
Fun stuff! Has run a similar thing with a simple bioinformatics problem before (calculating the ratio of G and Cs against A+G+C+T):
https://github.com/samuell/gccontent-benchmark#readme
Really hard - or impossible - to arrive at a definitive single number for one language, but the whole exercise is a lot of fun and quite informative IMO :)
- Benchmarking different programming languages for a simple bioinformatics task
- CSP slower?
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Performance comparison: counting words in Python, Go, C++, C, AWK, Forth, and Rust
might also enjoy this benchmark for bioinformatics, had a number of community-member submissions https://github.com/samuell/gccontent-benchmark
- Rust tops bioinformatics micro-benchmark
htsget-mvp
What are some alternatives?
countwords - Playing with counting word frequencies (and performance) in various languages.
fasten - :construction_worker: Fasten toolkit, for streaming operations on fastq files
countwords - Playing with counting word frequencies (and performance) in various languages.
sage - Proteomics search & quantification so fast that it feels like magic
Rust-Bio - This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
language-benchmarks - A simple benchmark system for compiled and interpreted languages.
s3-rust-noodles-bam - Rust+AWS+S3+Lambda+Noodles = Serverless Bioinformatics
krust - counts k-mers, written in rust
ftx - FTX Sample Code
countwords - Playing with counting word frequencies (and performance) in various languages.