diffexpr
Porting DESeq2 into python via rpy2 (by wckdouglas)
RNA-seq-analysis
RNAseq analysis notes from Ming Tang (by crazyhottommy)
| diffexpr | RNA-seq-analysis | |
|---|---|---|
| 1 | 1 | |
| 68 | 809 | |
| - | - | |
| 2.7 | 0.0 | |
| 11 months ago | over 2 years ago | |
| Python | Python | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
diffexpr
Posts with mentions or reviews of diffexpr.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-02-23.
-
Introduction to RNAseq and microRNA?
I was able to run deseq2 in Python with this wrapper: https://github.com/wckdouglas/diffexpr
RNA-seq-analysis
Posts with mentions or reviews of RNA-seq-analysis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-05-01.
-
Looking for advice regarding R-programming and data analysis for immunology/biology projects
One github user crazyhottommy has repositories that cover multiple tools related to several sequencing experiments also including RNA-seq. Really good stuff https://github.com/crazyhottommy/RNA-seq-analysis
What are some alternatives?
When comparing diffexpr and RNA-seq-analysis you can also consider the following projects:
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
COVID-19-RNA-Seq-datasets - A repository for sharing information on available COVID-19 RNA-Seq datasets
PyDESeq2 - A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
zarp - The Zavolab Automated RNA-seq Pipeline
R-graph-gallery - A website that displays hundreds of R charts with their code
rnaseq - RNA-seq analyses.
GermlineMutationCalling - An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files