dataset-uta4-dicom
dcm2niix
dataset-uta4-dicom | dcm2niix | |
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1 | 6 | |
16 | 807 | |
- | 2.6% | |
3.2 | 7.6 | |
over 3 years ago | 10 days ago | |
CSS | C++ | |
GNU Affero General Public License v3.0 | GNU General Public License v3.0 or later |
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dataset-uta4-dicom
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Why is it so hard to find DICOMs with Inversion Times recorded?
I've been searching for MR Images of anything that comes in DICOM format and have Inversion Time. I tried getting the fastMRI data set, the Visible Human Project and the UTA4 Dataset and NONE of them had DICOMs with Inversion Time recorded. Does anyone know why this is the case?
dcm2niix
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I have a doubt in brain MRI scan
Keep in mind that DICOM images are always converted to the NIfTI format when dealing with neuroimaging data, so the different software are expecting this image type. You should always keep the original DICOM files in your archive, but convert them to NIfTI and use that as your raw data input. To convert DICOM to NIfTI, you can use a tool like dcm2niix dcm2niix.
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Conversion of DICOM to .nii.gz
When I try to execute the .exe in the link you have provided the program does not run. However, according to this site: https://github.com/rordenlab/dcm2niix! the niix is included in MRIcroGL which I have tried.
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Can somebody help me quantify spatial resolution in CT scans of mice?
The spatial resolution of the scan is typically in the DICOM header, isn't it? Maybe try running the DICOM through something like dcm2niix (https://github.com/rordenlab/dcm2niix) which will convert to a NIFTI formatted image and generate a JSON file from the header. The header support isn't complete, so it might not get things correct from your CT image (or from an animal scanner for that matter), but it's worth a shot. I imagine there are similar tools for CT.
- Full-size 3D print of my brain
- Convert DICOM Slices to Nifti Using Nibabel(Python)
What are some alternatives?
label-studio - Label Studio is a multi-type data labeling and annotation tool with standardized output format
jpeg-autorotate - 📸 Node module to rotate JPEG images based on EXIF orientation.
cornerstone - JavaScript library to display interactive medical images including but not limited to DICOM
brainflow - BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors
sa-uta11-results - 📈 [CHI 2023] Results of the statistical analysis applied to the UTA11 guide.
gdl - GDL - GNU Data Language
GDCM - Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
MRIcroGL - v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
DicomToMesh - A command line tool to transform a DICOM volume into a 3d surface mesh (obj, stl or ply). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning. Works on Linux, OSX and Windows.
simnibs - Simulation of Non-Invasive Brain Stimulation
ESP32-targz - 🗜️ An Arduino library to unpack/uncompress tar, gz, and tar.gz files on ESP32 and ESP8266
3dprintyourbrain - How to 3D print your brain from a T1 MRI image.