data-science-ipython-notebooks
scanpy
| data-science-ipython-notebooks | scanpy | |
|---|---|---|
| 1 | 5 | |
| 26,514 | 1,763 | |
| - | 2.0% | |
| 0.0 | 9.3 | |
| about 2 months ago | 8 days ago | |
| Python | Python | |
| GNU General Public License v3.0 or later | BSD 3-clause "New" or "Revised" License |
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data-science-ipython-notebooks
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Beginner in Python for Data Science
data science ipython notebooks
scanpy
- Renaming Genes for Scanpy Plot
- Useful Python Decorators for Data Scientists
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[Scanpy] Installation issues related to pytables
Upon searching stack, I still do not understand the exact issue, as the file "hdf5extension.cp38-win_amd64" is present within C:\Users\username\anaconda3\lib\site-packages\tables\. Would anyone be able to explain the problem and any potential circumventions?
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standardize/normalize seq data
I would suggest you explore with SCANPY and verify if your batch labels generate a strong separation in your samples (PCA, tSNE, UMAP). If you then need to correct for batches, according to how simple/complex they are, you can choose a tool from this benchmark.
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Flipping one histogram below the axis.
I am plotting 2 1-D histograms on top of one another using a hold on command. Is there a way to have one histogram be upside down, and then to flip the entire plot 90˚? I am looking to create a violin plot https://github.com/theislab/scanpy/issues/1448 on my own, having one histogram on the left, and one on the right.
What are some alternatives?
manjaro-linux - Shell scripts for setting up Manjaro Linux for Python programming and deep learning
scikit-learn - scikit-learn: machine learning in Python
BirdNET - Soundscape analysis with BirdNET.
dash - Data Apps & Dashboards for Python. No JavaScript Required.
fugue - A unified interface for distributed computing. Fugue executes SQL, Python, Pandas, and Polars code on Spark, Dask and Ray without any rewrites.
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
kmodes - Python implementations of the k-modes and k-prototypes clustering algorithms, for clustering categorical data
dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js
sports-betting - Collection of sports betting AI tools.
pagoda2 - R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
PMapper - A tool for quickly evaluating IAM permissions in AWS.
getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science