cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets. (by saezlab)
FastIntegration
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis (by JinmiaoChenLab)
| cosmosR | FastIntegration | |
|---|---|---|
| 1 | 1 | |
| 53 | 21 | |
| - | - | |
| 6.3 | 0.0 | |
| 5 months ago | over 1 year ago | |
| R | R | |
| GNU General Public License v3.0 only | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cosmosR
Posts with mentions or reviews of cosmosR.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Multi-omics integration and analysis tutorials
COSMOS: https://github.com/saezlab/cosmosR
FastIntegration
Posts with mentions or reviews of FastIntegration.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How to integrate 2 million+ cells from scRNA-seq dataset without needing a huge amount of RAM?
I found an implementation of Seurat called FastIntegration which I think should work, but I am waiting on IT to grant me permission to run a cluster job with more RAM (1 TB wasn't enough). In the meantime, I am searching for another option - ideally, one that doesn't need terabytes of RAM.
What are some alternatives?
When comparing cosmosR and FastIntegration you can also consider the following projects:
drugfindR - Repository holding the code for the drugfindR R package
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data