biotite
dash-cytoscape
| biotite | dash-cytoscape | |
|---|---|---|
| 2 | 1 | |
| 557 | 573 | |
| 1.3% | 0.7% | |
| 9.0 | 9.3 | |
| 4 days ago | about 1 month ago | |
| Python | Python | |
| BSD 3-clause "New" or "Revised" License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biotite
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Journey into bioinformatics
For bioinformatics in Python, the BioPython library (https://biopython.org/) is commonly used. An alternative to this package is Biotite (https://www.biotite-python.org/), a package I am maintaining.
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What bioinformatics software can i give my contribute?
If you like programming in Python, you could contribute to Biotite (https://www.biotite-python.org/). You may have a look at the open issues at https://github.com/biotite-dev/biotite/issues or the projects at https://github.com/biotite-dev/biotite/projects. If you are interested in a project, you can get in contact via Mail or our Discord channel (https://discord.gg/cUjDguF).
dash-cytoscape
What are some alternatives?
Biopython - Official git repository for Biopython (originally converted from CVS)
django-plotly-dash - Expose plotly dash apps as django tags
3DFI - The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
cytoscape.js-dagre - The Dagre layout for DAGs and trees for Cytoscape.js
seqtk - Toolkit for processing sequences in FASTA/Q formats
dash-sample-apps - Open-source demos hosted on Dash Gallery
Clairvoyante - Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
PteraSoftware - Ptera Software is a fast, easy-to-use, and open-source software package for analyzing flapping-wing flight.
CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
dlPlotTool - Plot your DL model accuracies, learinng progress & outputs with no more than 3 lines of code.
scanpy - Single-cell analysis in Python. Scales to >1M cells.
dash-bootstrap-templates - A collection of 52 Plotly figure templates with a Bootstrap theme. Two theme switch components. Stylesheet to apply Bootstrap themes to Plotly Dash components.