bionix
funflow
bionix | funflow | |
---|---|---|
1 | 3 | |
74 | 360 | |
- | -0.3% | |
3.7 | 3.5 | |
5 months ago | 4 months ago | |
Nix | Haskell | |
BSD 3-clause "New" or "Revised" License | MIT License |
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bionix
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Experiences with workflow managers implemented in Haskell (funflow, porcupine, bioshake, ?)
I wasn't satisfied with this and wanted the software to be managed too, so we ended up working on BioNix (https://github.com/PapenfussLab/bionix) which does both pipeline execution and software management. This is nice because it makes everything extremely reproducible and removes a lot of the pain of dealing with setting up software etc at various HPC facilities. The down side is Nix isn't typed, so the typing aspect of bioshake was ported on the back of a ADT implementation in Nix, and at least for my work it has caught a fair few mistakes. Of course this isn't Haskell so it doesn't satisfy your criteria, just though it's worth a mention.
funflow
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Is there anything like funflow for rust?
funflow is a cool library for writing "workflows", but basically it's a library that implements caching. So if you have a process that reads a file A, does transformation A → B, then does B → C, then C → D, then writes D to disk, each step of that will be cached to disk and you won't need to redo the A → B step if your program crashes during the B → C step.
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Need a reason to start Haskell learning
You might wanna check out funflow
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Experiences with workflow managers implemented in Haskell (funflow, porcupine, bioshake, ?)
Funflow: https://github.com/tweag/funflow
What are some alternatives?
awesome-pipeline - A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
ChannelT - Generalized stream processors
hask - Category theory for Haskell with a lens flavor (you need GHC 7.8.3, not 7.8.2 to build this!)
lens-tutorial - The missing tutorial module for the lens library
apecs - a fast, extensible, type driven Haskell ECS framework for games
selective - Selective Applicative Functors: Declare Your Effects Statically, Select Which to Execute Dynamically
recursion-schemes - Generalized bananas, lenses and barbed wire
categories - categories from category-extras
effect-monad - Provides 'graded monads' and 'parameterised monads' to Haskell, enabling fine-grained reasoning about effects.
conduit-combinators - Type classes for mapping, folding, and traversing monomorphic containers
rio-orphans - A standard library for Haskell
parallel - a library for parallel programming